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2021-01-07fixed comments in the example yaml filesAndreaGuarracino
2020-11-15removed provider_sample_id referencesAndreaGuarracino
2020-11-12managed the assembly_method in the scripts, doc, and the example templatesAndreaGuarracino
2020-11-12updated alignment_protocol field in the script, doc, and the example templatesAndreaGuarracino
2020-11-08UTHSC samplesPjotr Prins
2020-10-26Adding upload metadata examplesPjotr Prins
2020-07-15Web: add license to input formPjotr Prins
2020-07-13Add ontology and schema for license information. For review.Pjotr Prins
2020-05-30Some spelling in the YAML examplePjotr Prins
2020-05-13Changed example not to make it a reference genome.Pjotr Prins
2020-04-30Last addition/edits to the meta data schemalltommy
2020-04-28Decision to settle for float instead of integers for the coveragelltommy
2020-04-28Whatever happend to the minimal metadata, I restored itlltommy
2020-04-28Adding field 'publication' to the maximum examplelltommy
2020-04-28Changes to the structure - we use lists now instead of strings where it ↵lltommy
makes sense. This allows us to have multiple values where in makes sense
2020-04-22updating example with ontology term for host_health_statuslltommy
2020-04-22Small changes all around, trying to make the importer/metadata betterlltommy
2020-04-21Update metadata.yamlBen Busby
2020-04-21Updated shex and manditory fields and stufflltommy
2020-04-20Add ShEx validationPeter Amstutz
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
2020-04-20Making collection date and collection location MANDATORY fields, turning ↵lltommy
orcid into IRI
2020-04-20Fixing string -> URI in speciman, plus other thingslltommy
2020-04-19small updates to the yaml schema, updating the example fileslltommy
2020-04-15submitter_orchid -> submitter_orcidStian Soiland-Reyes
"orchid" is the flower :) also use an actual ORCID example <https://orcid.org/0000-0002-1825-0097> which is fictitious person (with a real record!) - dedicated for example use.
2020-04-15Changing vaccination URIlltommy
2020-04-14Updated yaml schema and examples - plus ShEX shape to go along with it. ↵lltommy
Still work in progress but getting better and better I guess
2020-04-13Starting to turn values into IRIs ...lltommy
2020-04-11Adding descriptions to the yml schema, slight changes to the yml schemalltommy
2020-04-10Propagating metadata to output works now.Peter Amstutz
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
2020-04-10Fix swapped fasta/fastqPeter Amstutz
Replace example sequence with COV19 reference instead of HIV. Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
2020-04-10Updating schema and examples, including URIslltommy
2020-04-09Add "sequencefile" for the metadata subject.Peter Amstutz
2020-04-09Updating schema and examples. This is still work in progress but we get therelltommy
2020-04-07Add metadata validation with schema-saladPeter Amstutz
2020-04-07adding dummy metadata qc to the projectlltommy
2020-04-06README and examplePjotr Prins
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