diff options
| author | AndreaGuarracino | 2020-11-12 18:35:00 +0100 |
|---|---|---|
| committer | AndreaGuarracino | 2020-11-12 18:35:00 +0100 |
| commit | 87440554e57d5c5ed846e98a3b3ec428330e15e8 (patch) | |
| tree | f5c02264faac820a91cbe92974f279f5bec10c48 /example | |
| parent | 0bfe144ca40b4dfc1d75e195f3cfae7a8af94dc0 (diff) | |
| download | bh20-seq-resource-87440554e57d5c5ed846e98a3b3ec428330e15e8.tar.gz bh20-seq-resource-87440554e57d5c5ed846e98a3b3ec428330e15e8.tar.lz bh20-seq-resource-87440554e57d5c5ed846e98a3b3ec428330e15e8.zip | |
updated alignment_protocol field in the script, doc, and the example templates
Diffstat (limited to 'example')
| -rw-r--r-- | example/esr_example.yaml | 2 | ||||
| -rw-r--r-- | example/maximum_metadata_example.yaml | 2 | ||||
| -rw-r--r-- | example/uthsc_example.yaml | 2 |
3 files changed, 3 insertions, 3 deletions
diff --git a/example/esr_example.yaml b/example/esr_example.yaml index 48b11e4..b3e97d5 100644 --- a/example/esr_example.yaml +++ b/example/esr_example.yaml @@ -24,7 +24,7 @@ virus: technology: sample_sequencing_technology: [http://www.ebi.ac.uk/efo/EFO_0008632] // Nanopore MinION - sequence_assembly_method: https://github.com/ESR-NZ/NZ_SARS-CoV-2_genomics + alignment_protocol: https://github.com/ESR-NZ/NZ_SARS-CoV-2_genomics additional_technology_information: "Artic V3 workflow" submitter: diff --git a/example/maximum_metadata_example.yaml b/example/maximum_metadata_example.yaml index 54736f8..cd8890d 100644 --- a/example/maximum_metadata_example.yaml +++ b/example/maximum_metadata_example.yaml @@ -35,7 +35,7 @@ virus: technology: sample_sequencing_technology: [http://www.ebi.ac.uk/efo/EFO_0009173,http://www.ebi.ac.uk/efo/EFO_0009173] - sequence_assembly_method: Protocol used for assembly + alignment_protocol: Protocol used for assembly sequencing_coverage: [70.0, 100.0] additional_technology_information: Optional free text field for additional information diff --git a/example/uthsc_example.yaml b/example/uthsc_example.yaml index 956faf1..3bdbf6f 100644 --- a/example/uthsc_example.yaml +++ b/example/uthsc_example.yaml @@ -24,7 +24,7 @@ virus: technology: sample_sequencing_technology: [http://www.ebi.ac.uk/efo/EFO_0008632] // Nanopore MinION - sequence_assembly_method: guppy + alignment_protocol: guppy additional_technology_information: Optional free text field for additional information submitter: |