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| author | lltommy | 2020-04-09 14:34:54 +0200 |
|---|---|---|
| committer | lltommy | 2020-04-09 14:34:54 +0200 |
| commit | d7498093d0f5e0db052ef88815d57c2648d09425 (patch) | |
| tree | 7fcea4dd7986a34296917d3091e90e7c4ce8a98e /example | |
| parent | 9458ed33da08c787c4bb20af7b4108c93334b351 (diff) | |
| download | bh20-seq-resource-d7498093d0f5e0db052ef88815d57c2648d09425.tar.gz bh20-seq-resource-d7498093d0f5e0db052ef88815d57c2648d09425.tar.lz bh20-seq-resource-d7498093d0f5e0db052ef88815d57c2648d09425.zip | |
Updating schema and examples. This is still work in progress but we get there
Diffstat (limited to 'example')
| -rw-r--r-- | example/metadata.yaml | 49 | ||||
| -rw-r--r-- | example/minimal_example.yaml | 14 |
2 files changed, 49 insertions, 14 deletions
diff --git a/example/metadata.yaml b/example/metadata.yaml index 587d0be..8a93379 100644 --- a/example/metadata.yaml +++ b/example/metadata.yaml @@ -1,17 +1,38 @@ -sampleInformation: - location: "USA" - host : "Homo Sapiens" - sequenceTechnology: "Sanger" - assemblyMethod: "CLC Genomics" +host: + host_id: XX1 + host_species: string + host_common_name: string + host_sex: string + host_age: 20 + host_age_unit: string + host_health_status: string + host_treatment: string + additional_host_information: string -InstituteInformation: - OriginatingLab: "Erik's kitchen" - SubmittingLab: "National Institute for Viral Disease Control and Prevention, China CDC" +sample: + collector_name: XXX + collecting_institution: XXX + specimen_source: XXX + collection_date: XXX + collection_location: XXX + sample_storage_conditions: XXX + additional_collection_information: XXX -SubmitterInformation: - Submitter: "National Institute for Viral Disease Control and Prevention, China CDC" - submissionDate: "04-04-2020" +virus: + virus_species: XX + virus_strain: XX -VirusDetail: - VirusName: "hCoV-19/USA/identifer/2020" - AccessionId: "EPI_ISL_Random" +technology: + sample_sequencing_technology: XX + sequence_assembly_method: XX + sequencing_coverage: 70x + +submitter: + submitter_name: tester + submitter_address: testerAdd + originating_lab: testLab + lab_address: labAdd + provider_sample_id: string + submitter_sample_id: string + authors: testAuthor + submitter_id: X12
\ No newline at end of file diff --git a/example/minimal_example.yaml b/example/minimal_example.yaml new file mode 100644 index 0000000..201b080 --- /dev/null +++ b/example/minimal_example.yaml @@ -0,0 +1,14 @@ +host: + host_id: XX + host_species: string + +sample: + collector_name: XXX + collecting_institution: XXX + +technology: + sample_sequencing_technology: XX + +submitter: + submitter_name: tester + originating_lab: testLab
\ No newline at end of file |