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| author | Pjotr Prins | 2021-01-01 15:43:47 +0000 |
|---|---|---|
| committer | Pjotr Prins | 2021-01-01 16:19:08 +0000 |
| commit | ee01616a8c5ab5449325599dfaea32341f049784 (patch) | |
| tree | 5633b1c9006fff820c3422de3c9711204af30ebe /workflows/pull-data/genbank/README.md | |
| parent | a86633121cd92e37b2353f4bba8f2c37fa970d05 (diff) | |
| download | bh20-seq-resource-ee01616a8c5ab5449325599dfaea32341f049784.tar.gz bh20-seq-resource-ee01616a8c5ab5449325599dfaea32341f049784.tar.lz bh20-seq-resource-ee01616a8c5ab5449325599dfaea32341f049784.zip | |
update-from-genbank.py
Diffstat (limited to 'workflows/pull-data/genbank/README.md')
| -rw-r--r-- | workflows/pull-data/genbank/README.md | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/workflows/pull-data/genbank/README.md b/workflows/pull-data/genbank/README.md index d7c294b..479ddc9 100644 --- a/workflows/pull-data/genbank/README.md +++ b/workflows/pull-data/genbank/README.md @@ -6,7 +6,7 @@ sparql-fetch-ids > pubseq_ids.txt # --- get list of missing genbank IDs genbank-fetch-ids.py --skip pubseq_ids.txt > genbank_ids.txt # --- fetch XML -update-from-genbank.py --ids genbank_ids.txt --outdir ~/tmp/genbank +update-from-genbank.py --ids genbank_ids.txt --out ~/tmp/genbank # --- Transform to YAML and FASTA transform-genbank-xml2yamlfa --dir ~/tmp/genbank id --outdir ~/tmp/pubseq ``` |