pyhegp - Homomorphic encryption of genotypes and phenotypes

Age	Commit message (Expand)	Author
5 days	Add --force flag to encrypt subcommand permitting file overwriting.	Arun Isaac
5 days	Support encrypting phenotypes.	Arun Isaac
5 days	Compare complete frame in test_cat_*.	Arun Isaac
5 days	Do not import unused settings from hypothesis.	Arun Isaac
5 days	Test cat_phenotype.	Arun Isaac
5 days	Add cat-phenotype subcommand.	Arun Isaac
7 days	Rename cat subcommand to cat-genotype.	Arun Isaac
7 days	Add is_phenotype_metadata_column.	Arun Isaac
7 days	Drop duplicates in generated test phenotype frames.	Arun Isaac
7 days	Set CI environment variable when building Guix package.	Arun Isaac
7 days	Merge, not concat, genotype frames.	Arun Isaac
7 days	Test cat_genotype.	Arun Isaac
7 days	Add is_genotype_metadata_column.	Arun Isaac
7 days	Drop duplicates in generated test genotype frames.	Arun Isaac
7 days	Catenate an empty list of genotypes.	Arun Isaac
7 days	Move hypothesis strategies to separate file.	Arun Isaac
7 days	Add cat_genotype workhorse function.	Arun Isaac
7 days	Suffix CLI subcommand functions with _command.	Arun Isaac
8 days	Do not require output ciphertext file path.	Arun Isaac
8 days	Pass dtype to read_csv.	Arun Isaac
8 days	Use open method of Path object, rather than the open function.	Arun Isaac
8 days	Do not skip blank lines when reading TSV files.	Arun Isaac
8 days	Decide to not use logging.	Arun Isaac
8 days	Test for existence of output files.	Arun Isaac
8 days	Title case sentence.	Arun Isaac
8 days	Add phenotype file format and serialization functions.	Arun Isaac
2025-08-08	Clarify that the test suite is not for end users.	Arun Isaac
2025-08-08	Separate table of contents from introduction.	Arun Isaac
2025-08-08	Add table of contents to README.	Arun Isaac
2025-08-08	Replace csv extension with tsv extension on genotype files.	Arun Isaac
2025-08-08	Remove txt extension from summary files.	Arun Isaac
2025-08-08	Link to file formats documentation from README.	Arun Isaac
2025-08-08	Add example key file.	Arun Isaac
2025-08-08	Add example genotype file.	Arun Isaac
2025-08-08	Add example summary file.	Arun Isaac
2025-08-08	Reduce precision in test data files.	Arun Isaac
2025-08-08	Add instructions to install via Guix.	Arun Isaac
2025-08-08	Mark virtual environment creation as optional.	Arun Isaac
2025-08-08	Package as a CLI utility only, not a Python library.	Arun Isaac
2025-08-06	Subset to common SNPs.	Arun Isaac
2025-08-06	Standardize key files.	Arun Isaac
2025-08-06	Compute summary on encryption if not provided.	Arun Isaac
2025-08-06	Add simple workflow.	Arun Isaac
2025-08-06	Test joint workflow CLI.	Arun Isaac
2025-08-06	Standardize file formats in the likeness of plink files.	Arun Isaac
2025-08-06	Move negate to pyhegp.utils.	Arun Isaac
2025-08-06	Add gitignore.	Arun Isaac
2025-08-06	Loosen relative tolerance in test_pool_stats.	Arun Isaac
2025-08-01	Rename genotype_file argument in read_genotype.	Arun Isaac
2025-08-01	Test that read_genotype and write_genotype are inverses.	Arun Isaac