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| author | Arun Isaac | 2025-08-08 15:09:01 +0100 |
|---|---|---|
| committer | Arun Isaac | 2025-08-08 15:13:31 +0100 |
| commit | 4ab82e9cd7aef880293a99129bcd033c13ed22e3 (patch) | |
| tree | 172996a60f58775c10f7571aee3bbd9df487e401 | |
| parent | 3dfd429ce4de41500ee8b6831d6cec39b28319b4 (diff) | |
| download | pyhegp-4ab82e9cd7aef880293a99129bcd033c13ed22e3.tar.gz pyhegp-4ab82e9cd7aef880293a99129bcd033c13ed22e3.tar.lz pyhegp-4ab82e9cd7aef880293a99129bcd033c13ed22e3.zip | |
Add example genotype file.
| -rw-r--r-- | doc/file-formats.md | 14 |
1 files changed, 13 insertions, 1 deletions
diff --git a/doc/file-formats.md b/doc/file-formats.md index 888f3db..a5e44f4 100644 --- a/doc/file-formats.md +++ b/doc/file-formats.md @@ -33,7 +33,19 @@ The genotype file is a tab-separated values (TSV) file. The first line MUST be a the `reference` column is optional, and should be absent in encrypted genotype files. Here is an example genotype file. -`TODO: Add example.` +``` +chromosome position reference sample1 sample2 sample3 sample4 +chr11 3200246 G 0.4043 0.3655 0.3375 -0.614 +chr11 3205355 T 0.395 0.3545 0.3325 -0.5421 +chr11 3218908 A 0.3977 0.3207 0.3134 -0.4491 +chr11 3414044 A -0.3616 -0.328 -0.3234 0.074 +chr11 3460427 C -0.341 -0.3363 -0.3346 0.073 +chr11 3462290 A -0.3552 -0.3281 -0.3287 0.0912 +chr11 3462323 A -0.3524 -0.3296 -0.3298 0.0874 +chr11 3462325 T -0.3533 -0.3291 -0.3294 0.0885 +chr11 3462348 T -0.361 -0.3244 -0.326 0.0986 +chr11 3464016 A -0.3461 -0.334 -0.3331 0.08 +``` ## key file |