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| author | Arun Isaac | 2025-08-08 15:19:28 +0100 |
|---|---|---|
| committer | Arun Isaac | 2025-08-08 15:19:57 +0100 |
| commit | 079c09701a10324b265cc8f79642ebdb3293ecf9 (patch) | |
| tree | 736ee13ece90775787794552855d83cb6640c683 | |
| parent | 22b3c268ce789fd1d8c6bb27d4a6122f6602037b (diff) | |
| download | pyhegp-079c09701a10324b265cc8f79642ebdb3293ecf9.tar.gz pyhegp-079c09701a10324b265cc8f79642ebdb3293ecf9.tar.lz pyhegp-079c09701a10324b265cc8f79642ebdb3293ecf9.zip | |
Replace csv extension with tsv extension on genotype files.
| -rw-r--r-- | README.md | 6 |
1 files changed, 3 insertions, 3 deletions
diff --git a/README.md b/README.md index 728c206..a8aaa2a 100644 --- a/README.md +++ b/README.md @@ -64,7 +64,7 @@ They then send the encrypted data to the researcher. Note that data sharing is c Data owners generate summary statistics for their data. ``` -pyhegp summary genotype.csv -o summary +pyhegp summary genotype.tsv -o summary ``` They share this with the data broker who pools it to compute the summary statistics of the complete dataset. ``` @@ -72,11 +72,11 @@ pyhegp pool -o complete-summary summary1 summary2 ... ``` The data broker shares these summary statistics with the data owners. The data owners standardize their data using these summary statistics, and encrypt their data using a random key. ``` -pyhegp encrypt -s complete-summary -o encrypted-genotype.csv genotype.csv +pyhegp encrypt -s complete-summary -o encrypted-genotype.tsv genotype.tsv ``` Finally, the data owners share the encrypted data with the broker who concatenates it and shares it with all parties. ``` -pyhegp cat -o complete-encrypted-genotype.csv encrypted-genotype1.csv encrypted-genotype2.csv ... +pyhegp cat -o complete-encrypted-genotype.tsv encrypted-genotype1.tsv encrypted-genotype2.tsv ... ``` Note that all data sharing is carried out-of-band and is outside the scope of `pyhegp`. |