pyhegp - Homomorphic encryption of genotypes and phenotypes

Age	Commit message (Expand)	Author
3 days	Generalize split_data_frame to split along any axis.	Arun Isaac
3 days	Simplify split_data_frame so it is more composable.	Arun Isaac
4 days	Generate unique SNPs in genotype frames without dropping duplicates.	Arun Isaac
4 days	Deduplicate genotype frame metadata generation.	Arun Isaac
4 days	Drop SNPs with a zero standard deviation.	Arun Isaac
4 days	Fix typo in comment: tha->that.	Arun Isaac
5 days	Avoid wildcard import from helpers.strategies.	Arun Isaac
5 days	Limit values in genotype and phenotype strategies.	Arun Isaac
5 days	Test that ciphertext does not contain NA values.	Arun Isaac
5 days	Parameterize number of samples in phenotype frame strategy.	Arun Isaac
5 days	Parameterize number of samples in genotype frame strategy.	Arun Isaac
5 days	Parameterize presence of reference column in genotype frame strategy.	Arun Isaac
5 days	Add keys strategy.	Arun Isaac
5 days	Raise exception if data frame to be written has NA values.	Arun Isaac
5 days	Add --force flag to encrypt subcommand permitting file overwriting.	Arun Isaac
5 days	Support encrypting phenotypes.	Arun Isaac
5 days	Compare complete frame in test_cat_*.	Arun Isaac
5 days	Do not import unused settings from hypothesis.	Arun Isaac
5 days	Test cat_phenotype.	Arun Isaac
5 days	Add cat-phenotype subcommand.	Arun Isaac
7 days	Rename cat subcommand to cat-genotype.	Arun Isaac
7 days	Add is_phenotype_metadata_column.	Arun Isaac
7 days	Drop duplicates in generated test phenotype frames.	Arun Isaac
7 days	Set CI environment variable when building Guix package.	Arun Isaac
7 days	Merge, not concat, genotype frames.	Arun Isaac
7 days	Test cat_genotype.	Arun Isaac
7 days	Add is_genotype_metadata_column.	Arun Isaac
7 days	Drop duplicates in generated test genotype frames.	Arun Isaac
7 days	Catenate an empty list of genotypes.	Arun Isaac
7 days	Move hypothesis strategies to separate file.	Arun Isaac
7 days	Add cat_genotype workhorse function.	Arun Isaac
7 days	Suffix CLI subcommand functions with _command.	Arun Isaac
8 days	Do not require output ciphertext file path.	Arun Isaac
8 days	Pass dtype to read_csv.	Arun Isaac
8 days	Use open method of Path object, rather than the open function.	Arun Isaac
8 days	Do not skip blank lines when reading TSV files.	Arun Isaac
8 days	Decide to not use logging.	Arun Isaac
8 days	Test for existence of output files.	Arun Isaac
8 days	Title case sentence.	Arun Isaac
8 days	Add phenotype file format and serialization functions.	Arun Isaac
2025-08-08	Clarify that the test suite is not for end users.	Arun Isaac
2025-08-08	Separate table of contents from introduction.	Arun Isaac
2025-08-08	Add table of contents to README.	Arun Isaac
2025-08-08	Replace csv extension with tsv extension on genotype files.	Arun Isaac
2025-08-08	Remove txt extension from summary files.	Arun Isaac
2025-08-08	Link to file formats documentation from README.	Arun Isaac
2025-08-08	Add example key file.	Arun Isaac
2025-08-08	Add example genotype file.	Arun Isaac
2025-08-08	Add example summary file.	Arun Isaac
2025-08-08	Reduce precision in test data files.	Arun Isaac