pyhegp - Homomorphic encryption of genotypes and phenotypes

Age	Commit message (Expand)	Author
7 days	Add cat_genotype workhorse function.	Arun Isaac
7 days	Suffix CLI subcommand functions with _command.	Arun Isaac
7 days	Do not require output ciphertext file path.	Arun Isaac
7 days	Pass dtype to read_csv.	Arun Isaac
7 days	Use open method of Path object, rather than the open function.	Arun Isaac
7 days	Do not skip blank lines when reading TSV files.	Arun Isaac
7 days	Decide to not use logging.	Arun Isaac
7 days	Test for existence of output files.	Arun Isaac
8 days	Title case sentence.	Arun Isaac
8 days	Add phenotype file format and serialization functions.	Arun Isaac
2025-08-08	Clarify that the test suite is not for end users.	Arun Isaac
2025-08-08	Separate table of contents from introduction.	Arun Isaac
2025-08-08	Add table of contents to README.	Arun Isaac
2025-08-08	Replace csv extension with tsv extension on genotype files.	Arun Isaac
2025-08-08	Remove txt extension from summary files.	Arun Isaac
2025-08-08	Link to file formats documentation from README.	Arun Isaac
2025-08-08	Add example key file.	Arun Isaac
2025-08-08	Add example genotype file.	Arun Isaac
2025-08-08	Add example summary file.	Arun Isaac
2025-08-08	Reduce precision in test data files.	Arun Isaac
2025-08-08	Add instructions to install via Guix.	Arun Isaac
2025-08-08	Mark virtual environment creation as optional.	Arun Isaac
2025-08-08	Package as a CLI utility only, not a Python library.	Arun Isaac
2025-08-06	Subset to common SNPs.	Arun Isaac
2025-08-06	Standardize key files.	Arun Isaac
2025-08-06	Compute summary on encryption if not provided.	Arun Isaac
2025-08-06	Add simple workflow.	Arun Isaac
2025-08-06	Test joint workflow CLI.	Arun Isaac
2025-08-06	Standardize file formats in the likeness of plink files.	Arun Isaac
2025-08-06	Move negate to pyhegp.utils.	Arun Isaac
2025-08-06	Add gitignore.	Arun Isaac
2025-08-06	Loosen relative tolerance in test_pool_stats.	Arun Isaac
2025-08-01	Rename genotype_file argument in read_genotype.	Arun Isaac
2025-08-01	Test that read_genotype and write_genotype are inverses.	Arun Isaac
2025-08-01	Ensure that read genotype matrices have 2 dimensions.	Arun Isaac
2025-08-01	Write genotype matrix with increased precision.	Arun Isaac
2025-08-01	Tab-separate data section of summary files.	Arun Isaac
2025-08-01	Abstract out write_genotype.	Arun Isaac
2025-08-01	Test solution of linear system after encryption.	Arun Isaac
2025-08-01	Separate standardization from encryption.	Arun Isaac
2025-08-01	Do not test encryption on order 1 matrices.	Arun Isaac
2025-08-01	Mention TianjingZhao2023 paper in README.	Arun Isaac
2025-07-18	Add CI badge to README.	Arun Isaac
2025-07-17	Document usage instructions and workflow.	Arun Isaac
2025-07-17	Add development version installation instructions.	Arun Isaac
2025-07-17	Add cat subcommand.	Arun Isaac
2025-07-17	Only output key optionally.	Arun Isaac
2025-07-17	Use File instead of Path for encrypt subcommand options.	Arun Isaac
2025-07-17	Turn arguments of the encrypt subcommand into options.	Arun Isaac
2025-07-17	Move read_genotype to pyhegp.serialization.	Arun Isaac