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Homomorphic encryption of genotypes and phenotypes
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2025-09-08
Link to PlantUML images built by the CI.
HEAD
main
Arun Isaac
2025-09-08
Specify PlantUML output filenames.
Arun Isaac
2025-09-08
Replace PlantUML image generation script with Guix computed-file.
Arun Isaac
2025-09-08
Hint at pyhegp commands in UML visualization.
Arun Isaac
2025-09-08
Add @startuml and @enduml tags.
Arun Isaac
2025-09-08
Split up hsmice test into smaller computed files.
Arun Isaac
2025-09-08
Exclude .guix and e2e-tests from the pyhegp package.
Arun Isaac
2025-09-08
Detail SNP dropping.
Arun Isaac
2025-09-08
Update README instructions with phenotype encryption.
Arun Isaac
2025-09-08
Comment on QTL checking code.
Arun Isaac
2025-09-06
Update r-mixed-model-gwas to 1.3.1.
Arun Isaac
2025-09-06
Add end-to-end tests for hsmice dataset.
Arun Isaac
2025-09-06
Construct empty genotype frame using series.
Arun Isaac
2025-09-06
Roll cat_data_frames into cat_genotype.
Arun Isaac
2025-09-06
Catenate phenotype frames along the index.
Arun Isaac
2025-09-06
Split catenable phenotype frames along the index.
Arun Isaac
2025-09-06
Generalize split_data_frame to split along any axis.
Arun Isaac
2025-09-06
Simplify split_data_frame so it is more composable.
Arun Isaac
2025-09-05
Generate unique SNPs in genotype frames without dropping duplicates.
Arun Isaac
2025-09-05
Deduplicate genotype frame metadata generation.
Arun Isaac
2025-09-05
Drop SNPs with a zero standard deviation.
Arun Isaac
2025-09-05
Fix typo in comment: tha->that.
Arun Isaac
2025-09-04
Avoid wildcard import from helpers.strategies.
Arun Isaac
2025-09-04
Limit values in genotype and phenotype strategies.
Arun Isaac
2025-09-04
Test that ciphertext does not contain NA values.
Arun Isaac
2025-09-04
Parameterize number of samples in phenotype frame strategy.
Arun Isaac
2025-09-04
Parameterize number of samples in genotype frame strategy.
Arun Isaac
2025-09-04
Parameterize presence of reference column in genotype frame strategy.
Arun Isaac
2025-09-04
Add keys strategy.
Arun Isaac
2025-09-04
Raise exception if data frame to be written has NA values.
Arun Isaac
2025-09-04
Add --force flag to encrypt subcommand permitting file overwriting.
Arun Isaac
2025-09-04
Support encrypting phenotypes.
Arun Isaac
2025-09-04
Compare complete frame in test_cat_*.
Arun Isaac
2025-09-04
Do not import unused settings from hypothesis.
Arun Isaac
2025-09-04
Test cat_phenotype.
Arun Isaac
2025-09-04
Add cat-phenotype subcommand.
Arun Isaac
2025-09-02
Rename cat subcommand to cat-genotype.
Arun Isaac
2025-09-02
Add is_phenotype_metadata_column.
Arun Isaac
2025-09-02
Drop duplicates in generated test phenotype frames.
Arun Isaac
2025-09-02
Set CI environment variable when building Guix package.
Arun Isaac
2025-09-02
Merge, not concat, genotype frames.
Arun Isaac
2025-09-02
Test cat_genotype.
Arun Isaac
2025-09-02
Add is_genotype_metadata_column.
Arun Isaac
2025-09-02
Drop duplicates in generated test genotype frames.
Arun Isaac
2025-09-02
Catenate an empty list of genotypes.
Arun Isaac
2025-09-02
Move hypothesis strategies to separate file.
Arun Isaac
2025-09-02
Add cat_genotype workhorse function.
Arun Isaac
2025-09-02
Suffix CLI subcommand functions with _command.
Arun Isaac
2025-09-01
Do not require output ciphertext file path.
Arun Isaac
2025-09-01
Pass dtype to read_csv.
Arun Isaac
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