pyhegp - Homomorphic encryption of genotypes and phenotypes

Age	Commit message (Expand)	Author
44 hours	Clarify that the test suite is not for end users. HEAD main	Arun Isaac
46 hours	Separate table of contents from introduction.	Arun Isaac
46 hours	Add table of contents to README.	Arun Isaac
46 hours	Replace csv extension with tsv extension on genotype files.	Arun Isaac
46 hours	Remove txt extension from summary files.	Arun Isaac
46 hours	Link to file formats documentation from README.	Arun Isaac
46 hours	Add example key file.	Arun Isaac
46 hours	Add example genotype file.	Arun Isaac
46 hours	Add example summary file.	Arun Isaac
46 hours	Reduce precision in test data files.	Arun Isaac
2 days	Add instructions to install via Guix.	Arun Isaac
2 days	Mark virtual environment creation as optional.	Arun Isaac
2 days	Package as a CLI utility only, not a Python library.	Arun Isaac
4 days	Subset to common SNPs.	Arun Isaac
4 days	Standardize key files.	Arun Isaac
4 days	Compute summary on encryption if not provided.	Arun Isaac
4 days	Add simple workflow.	Arun Isaac
4 days	Test joint workflow CLI.	Arun Isaac
4 days	Standardize file formats in the likeness of plink files.	Arun Isaac
4 days	Move negate to pyhegp.utils.	Arun Isaac
4 days	Add gitignore.	Arun Isaac
4 days	Loosen relative tolerance in test_pool_stats.	Arun Isaac
9 days	Rename genotype_file argument in read_genotype.	Arun Isaac
9 days	Test that read_genotype and write_genotype are inverses.	Arun Isaac
9 days	Ensure that read genotype matrices have 2 dimensions.	Arun Isaac
9 days	Write genotype matrix with increased precision.	Arun Isaac
9 days	Tab-separate data section of summary files.	Arun Isaac
9 days	Abstract out write_genotype.	Arun Isaac
10 days	Test solution of linear system after encryption.	Arun Isaac
10 days	Separate standardization from encryption.	Arun Isaac
10 days	Do not test encryption on order 1 matrices.	Arun Isaac
10 days	Mention TianjingZhao2023 paper in README.	Arun Isaac
2025-07-18	Add CI badge to README.	Arun Isaac
2025-07-17	Document usage instructions and workflow.	Arun Isaac
2025-07-17	Add development version installation instructions.	Arun Isaac
2025-07-17	Add cat subcommand.	Arun Isaac
2025-07-17	Only output key optionally.	Arun Isaac
2025-07-17	Use File instead of Path for encrypt subcommand options.	Arun Isaac
2025-07-17	Turn arguments of the encrypt subcommand into options.	Arun Isaac
2025-07-17	Move read_genotype to pyhegp.serialization.	Arun Isaac
2025-07-17	Standardize before encryption.	Arun Isaac
2025-07-17	Add standardization.	Arun Isaac
2025-07-17	Add pool subcommand.	Arun Isaac
2025-07-17	Add summary subcommand.	Arun Isaac
2025-07-17	Implement the summary file format.	Arun Isaac
2025-07-17	Remove decrypt subcommand.	Arun Isaac
2025-07-17	Use python-pytest built with python-hypothesis-next.	Arun Isaac
2025-07-17	Use default array shapes testing encryption/decryption.	Arun Isaac
2025-07-17	Reduce maximum matrix size testing encryption/decryption.	Arun Isaac
2025-07-17	Organize source into directory structure.	Arun Isaac