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Homomorphic encryption of genotypes and phenotypes
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Author
4 days
Require that (chromosome, position) in genotype frames is unique.
HEAD
main
Arun Isaac
4 days
Restrict reference to single character.
Arun Isaac
4 days
Do not drop zero standard deviation SNPs with --only-center.
Arun Isaac
4 days
Remove unnecessary is_phenotype_metadata_column import.
Arun Isaac
4 days
Explain why SNPs are being dropped.
Arun Isaac
4 days
Move SNP deletion out of encrypt_genotype function.
Arun Isaac
4 days
Recognize "intercept" as a phenotype metadata column.
Arun Isaac
4 days
Remove key_blocks variable name in click.option.
Arun Isaac
2026-01-16
Add --key-blocks argument.
Arun Isaac
2026-01-16
Allow generation of block diagonal keys.
Arun Isaac
2026-01-16
Add BlockDiagonalMatrix.
Arun Isaac
2026-01-16
Remove unnecessary imports from test_serialization.py.
Arun Isaac
2026-01-16
Add --only-center option.
Arun Isaac
2026-01-16
Separate centering from normalization.
Arun Isaac
2026-01-16
Link to RFC2119 for definition of capitalized terms.
Arun Isaac
2026-01-16
Add intercept column in phenotypes file.
Arun Isaac
2026-01-15
Add --version option.
Arun Isaac
2026-01-15
Allow passing in a key.
Arun Isaac
2025-12-01
README: Add FAQ about standardization.
Arun Isaac
2025-11-28
Handle absent optional reference column.
Arun Isaac
2025-11-28
Clarify that only one of pip or Guix is required.
Arun Isaac
2025-11-13
Disable tests for julia-jwas.
Arun Isaac
2025-11-13
Depend explicitly on the guix-rust-past-crates channel.
Arun Isaac
2025-11-13
Add JWAS tests to HSmice test.
Arun Isaac
2025-11-13
Fold line.
Arun Isaac
2025-11-13
Parameterize query when checking for the QTL.
Arun Isaac
2025-11-12
Replace python-hypothesis-next with python-hypothesis.
Arun Isaac
2025-09-08
Link to PlantUML images built by the CI.
Arun Isaac
2025-09-08
Specify PlantUML output filenames.
Arun Isaac
2025-09-08
Replace PlantUML image generation script with Guix computed-file.
Arun Isaac
2025-09-08
Hint at pyhegp commands in UML visualization.
Arun Isaac
2025-09-08
Add @startuml and @enduml tags.
Arun Isaac
2025-09-08
Split up hsmice test into smaller computed files.
Arun Isaac
2025-09-08
Exclude .guix and e2e-tests from the pyhegp package.
Arun Isaac
2025-09-08
Detail SNP dropping.
Arun Isaac
2025-09-08
Update README instructions with phenotype encryption.
Arun Isaac
2025-09-08
Comment on QTL checking code.
Arun Isaac
2025-09-06
Update r-mixed-model-gwas to 1.3.1.
Arun Isaac
2025-09-06
Add end-to-end tests for hsmice dataset.
Arun Isaac
2025-09-06
Construct empty genotype frame using series.
Arun Isaac
2025-09-06
Roll cat_data_frames into cat_genotype.
Arun Isaac
2025-09-06
Catenate phenotype frames along the index.
Arun Isaac
2025-09-06
Split catenable phenotype frames along the index.
Arun Isaac
2025-09-06
Generalize split_data_frame to split along any axis.
Arun Isaac
2025-09-06
Simplify split_data_frame so it is more composable.
Arun Isaac
2025-09-05
Generate unique SNPs in genotype frames without dropping duplicates.
Arun Isaac
2025-09-05
Deduplicate genotype frame metadata generation.
Arun Isaac
2025-09-05
Drop SNPs with a zero standard deviation.
Arun Isaac
2025-09-05
Fix typo in comment: tha->that.
Arun Isaac
2025-09-04
Avoid wildcard import from helpers.strategies.
Arun Isaac
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