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|
cwlVersion: v1.1
class: CommandLineTool
$namespaces:
arv: "http://arvados.org/cwl#"
cwltool: "http://commonwl.org/cwltool#"
requirements:
arv:APIRequirement: {}
arv:RuntimeConstraints:
outputDirType: keep_output_dir
DockerRequirement:
dockerImageId: arvados-and-samtools
WorkReuse:
enableReuse: false
ResourceRequirement:
coresMin: 1
ramMin: 1024
baseCommand: python3
inputs:
script:
type: File
default:
class: File
location: collect-seqs.py
inputBinding: {position: 1}
src_project:
type: string
inputBinding: {position: 2}
metadataSchema:
type: File
inputBinding: {position: 3}
exclude:
type: File?
inputBinding: {position: 4}
outputs:
relabeledSeqs:
type: File
outputBinding:
glob: relabeledSeqs.fasta
secondaryFiles: [.fai]
mergedMetadata:
type: File
outputBinding:
glob: mergedMetadata.ttl
|
