index
:
bh20-seq-resource
analysis-refactor
fasta-subset-from-query
generate-cwl
master
new_assembly_method_field
pangenome_workflow_abpoa
upload-download-status
uuid-for-resource
yamlfa2ttl
Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis
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path:
root
/
workflows
/
pangenome-generate
Mode
Name
Size
-rw-r--r--
abpoa.cwl
577
log
plain
-rw-r--r--
arv-main.cwl
1284
log
plain
d---------
arvados-and-samtools-dockerfile
78
log
plain
-rw-r--r--
collect-seqs.cwl
920
log
plain
-rw-r--r--
collect-seqs.py
3172
log
plain
-rw-r--r--
dups2metadata.cwl
357
log
plain
-rw-r--r--
dups2metadata.py
400
log
plain
-rw-r--r--
from_sparql.cwl
739
log
plain
-rw-r--r--
from_sparql.py
202
log
plain
-rw-r--r--
merge-metadata.cwl
1288
log
plain
-rw-r--r--
merge-metadata.py
1347
log
plain
-rw-r--r--
odgi-build-from-xpoa-gfa.cwl
780
log
plain
-rw-r--r--
odgi-build.cwl
756
log
plain
-rw-r--r--
odgi_to_rdf.cwl
503
log
plain
-rw-r--r--
pangenome-generate.cwl
3464
log
plain
-rw-r--r--
pangenome-generate_abpoa.cwl
3400
log
plain
-rw-r--r--
pangenome-generate_spoa.cwl
3394
log
plain
-rw-r--r--
query-to-gfa.cwl
807
log
plain
-rw-r--r--
relabel-seqs.cwl
1287
log
plain
-rw-r--r--
relabel-seqs.py
1426
log
plain
-rw-r--r--
seqwish.cwl
750
log
plain
-rw-r--r--
sort_fasta_by_quality_and_len.cwl
637
log
plain
-rw-r--r--
sort_fasta_by_quality_and_len.py
1879
log
plain
-rw-r--r--
spoa.cwl
573
log
plain
-rw-r--r--
testjob.yml
415
log
plain