pangenome-generate « workflows - bh20-seq-resource - Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis

Mode	Name	Size
-rw-r--r--	abpoa.cwl	577	log plain about
-rw-r--r--	arv-main.cwl	1284	log plain about
d---------	arvados-and-samtools-dockerfile	78	log plain
-rw-r--r--	collect-seqs.cwl	920	log plain about
-rw-r--r--	collect-seqs.py	3172	log plain about
-rw-r--r--	dups2metadata.cwl	357	log plain about
-rw-r--r--	dups2metadata.py	400	log plain about
-rw-r--r--	from_sparql.cwl	739	log plain about
-rw-r--r--	from_sparql.py	202	log plain about
-rw-r--r--	merge-metadata.cwl	1288	log plain about
-rw-r--r--	merge-metadata.py	1347	log plain about
-rw-r--r--	odgi-build-from-xpoa-gfa.cwl	780	log plain about
-rw-r--r--	odgi-build.cwl	756	log plain about
-rw-r--r--	odgi_to_rdf.cwl	503	log plain about
-rw-r--r--	pangenome-generate.cwl	3464	log plain about
-rw-r--r--	pangenome-generate_abpoa.cwl	3400	log plain about
-rw-r--r--	pangenome-generate_spoa.cwl	3394	log plain about
-rw-r--r--	query-to-gfa.cwl	807	log plain about
-rw-r--r--	relabel-seqs.cwl	1287	log plain about
-rw-r--r--	relabel-seqs.py	1426	log plain about
-rw-r--r--	seqwish.cwl	750	log plain about
-rw-r--r--	sort_fasta_by_quality_and_len.cwl	637	log plain about
-rw-r--r--	sort_fasta_by_quality_and_len.py	1879	log plain about
-rw-r--r--	spoa.cwl	573	log plain about
-rw-r--r--	testjob.yml	415	log plain about