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path: root/scripts/from_genbank_to_fasta_and_yaml.py
AgeCommit message (Expand)Author
2020-06-22moved the genbank script in his specific directoryAndreaGuarracino
2020-06-22little fix for specimen_sourceAndrea Guarracino
2020-06-12species are managed in another dictionary, try-catch added to avoid unexpecte...Andrea Guarracino
2020-06-07the script is more verbose; added other countriesAndreaGuarracino
2020-06-06fixed collection_location when it is not present in the dictionary termsAndreaGuarracino
2020-06-06fixed collection-date management using a parserAndreaGuarracino
2020-06-06fixed collection-date management; updated assembly info management for new IDsAndreaGuarracino
2020-05-31Added new species and specimen sourcesAndrea Guarracino
2020-05-31Updated the host_sex and host_age managementAndrea Guarracino
2020-05-31The NCBI Virus entries are updated automaticallyAndrea Guarracino
2020-04-30fixed UO_0000036 for yearAndrea Guarracino
2020-04-30Merge pull request #41 from AndreaGuarracino/patch-14LLTommy
2020-04-30Wrap import script to run as a workflowPeter Amstutz
2020-04-29the date is now handled more formallyAndrea Guarracino
2020-04-28updated to manage list fields and added new control on nasopharyngeal/throat ...Andrea Guarracino
2020-04-28Changes to the structure - we use lists now instead of strings where it makes...lltommy
2020-04-23code cleaning, refactoring, submitter name and addressAndrea Guarracino
2020-04-22code cleaning, checking and writing missing term on fileAndrea Guarracino
2020-04-22Small changes all around, trying to make the importer/metadata betterlltommy
2020-04-21Tweak handling of "coverage" also fix typoPeter Amstutz
2020-04-21Working on NCBI importPeter Amstutz
2020-04-21Updated shex and manditory fields and stufflltommy
2020-04-19added 'np/op' control for specimen_sourceAndrea Guarracino
2020-04-19fixed missing variable and managed comma in dictsAndrea Guarracino
2020-04-18new script releaseAndrea Guarracino
2020-04-14Rename script/from_genbank_to_fasta_and_yaml.py to scripts/from_genbank_to_fa...Andrea Guarracino
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