index
:
bh20-seq-resource
analysis-refactor
fasta-subset-from-query
generate-cwl
master
new_assembly_method_field
pangenome_workflow_abpoa
upload-download-status
uuid-for-resource
yamlfa2ttl
Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis
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bh20sequploader
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2020-04-22
Including restrictions to the host status
lltommy
2020-04-22
Small changes all around, trying to make the importer/metadata better
lltommy
2020-04-21
Work around CWL content size limit by chunking
Peter Amstutz
2020-04-21
add noLinkCheck to specimen_source2
Peter Amstutz
2020-04-21
Tweak handling of "coverage" also fix typo
Peter Amstutz
2020-04-21
Working on NCBI import
Peter Amstutz
2020-04-21
Updated shex and manditory fields and stuff
lltommy
2020-04-20
Reconsidered these should be noLinkCheck
Peter Amstutz
2020-04-20
Add identity:true to collection_location
Peter Amstutz
2020-04-20
Schema changes from @LLTommy
Peter Amstutz
2020-04-20
Better handling of duplicate sequences
Peter Amstutz
2020-04-20
Make doc not contradict option list
Adam Novak
2020-04-20
Put back Intersex with the closest PATO equivalent
Adam Novak
2020-04-20
Add ShEx validation
Peter Amstutz
2020-04-20
Making collection date and collection location MANDATORY fields, turning orci...
lltommy
2020-04-20
Fixing string -> URI in speciman, plus other things
lltommy
2020-04-19
small updates to the yaml schema, updating the example files
lltommy
2020-04-19
Updating NCBI dictonaries, adding UI options, small yaml schema changes
lltommy
2020-04-19
Merge pull request #24 from adamnovak/dropdowns
Pjotr Prins
2020-04-18
Extending yaml schema a bit and adding additional information for the UI
lltommy
2020-04-17
Copy NCIT IRIs back to schema doc
Adam Novak
2020-04-17
Spruce up the options file and add missing values
Adam Novak
2020-04-17
Create option dropdowns from an options file
Adam Novak
2020-04-15
Typo: submitter_orchid -> submitter_orcid
Stian Soiland-Reyes
2020-04-15
Changing vaccination URI
lltommy
2020-04-15
Fixing small typo
lltommy
2020-04-15
relaxing regEx cause orichids can look like whatever it seems, not only numbers
lltommy
2020-04-14
Updated yaml schema and examples - plus ShEX shape to go along with it. Still...
lltommy
2020-04-13
Inject path to find module bh20sequploader
Pjotr Prins
2020-04-13
Add __init__.py and fix imports
Peter Amstutz
2020-04-13
Closes #5
Pjotr Prins
2020-04-13
Starting to turn values into IRIs ...
lltommy
2020-04-11
Adding noLinkCheck to root
lltommy
2020-04-11
Adding descriptions to the yml schema, slight changes to the yml schema
lltommy
2020-04-10
Propagating metadata to output works now.
Peter Amstutz
2020-04-10
Fix swapped fasta/fastq
Peter Amstutz
2020-04-10
Add qc_fasta
Peter Amstutz
2020-04-10
Fix up fasta/fastq validation
Peter Amstutz
2020-04-10
Validate & propagate metadata
Peter Amstutz
2020-04-10
Merge pull request #6 from uniqueg/fa_fq_validation
Pjotr Prins
2020-04-10
Fixed TypeError: 'module' object is not callable
Pjotr Prins
2020-04-10
validate seq format with magic file
Alex Kanitz
2020-04-10
Updating schema and examples, including URIs
lltommy
2020-04-09
Moved Guix documentation into separate file (as it confused people ;)
Pjotr Prins
2020-04-09
Add "sequencefile" for the metadata subject.
Peter Amstutz
2020-04-09
Adding functionality of turning keys into ontology terms (URI). This is work ...
lltommy
2020-04-09
Updating schema and examples. This is still work in progress but we get there
lltommy
2020-04-08
Fastq now runs through fastq2fasta pipeline
Peter Amstutz
2020-04-07
Add metadata validation with schema-salad
Peter Amstutz
2020-04-07
Merge branch 'master' of https://github.com/arvados/bh20-seq-resource
lltommy
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