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| author | lltommy | 2020-04-09 14:34:54 +0200 |
|---|---|---|
| committer | lltommy | 2020-04-09 14:34:54 +0200 |
| commit | d7498093d0f5e0db052ef88815d57c2648d09425 (patch) | |
| tree | 7fcea4dd7986a34296917d3091e90e7c4ce8a98e /bh20sequploader | |
| parent | 9458ed33da08c787c4bb20af7b4108c93334b351 (diff) | |
| download | bh20-seq-resource-d7498093d0f5e0db052ef88815d57c2648d09425.tar.gz bh20-seq-resource-d7498093d0f5e0db052ef88815d57c2648d09425.tar.lz bh20-seq-resource-d7498093d0f5e0db052ef88815d57c2648d09425.zip | |
Updating schema and examples. This is still work in progress but we get there
Diffstat (limited to 'bh20sequploader')
| -rw-r--r-- | bh20sequploader/bh20seq-schema.yml | 60 |
1 files changed, 42 insertions, 18 deletions
diff --git a/bh20sequploader/bh20seq-schema.yml b/bh20sequploader/bh20seq-schema.yml index 6e0973a..38cfb48 100644 --- a/bh20sequploader/bh20seq-schema.yml +++ b/bh20sequploader/bh20seq-schema.yml @@ -1,36 +1,60 @@ $graph: -- name: sampleInformationSchema +- name: hostSchema type: record fields: - location: string - host: string - sequenceTechnology: string - assemblyMethod: string + host_id: string + host_species: string + host_common_name: string? + host_sex: string? + host_age: int? + host_age_unit: string? + host_health_status: string? + host_treatment: string? + additional_host_information: string? -- name: InstituteInformationSchema +- name: sampleSchema type: record fields: - OriginatingLab: string - SubmittingLab: string + collector_name: string + collecting_institution: string + specimen_source: string? + collection_date: string? + collection_location: string? + sample_storage_conditions: string? + additional_collection_information: string? -- name: SubmitterInformationSchema +- name: virusSchema type: record fields: - Submitter: string - submissionDate: string + virus_species: string? + virus_strain: string? -- name: VirusDetailSchema +- name: technologySchema type: record fields: - VirusName: string - AccessionId: string + sample_sequencing_technology: string + sequence_assembly_method: string? + sequencing_coverage: string? + +- name: submitterSchema + type: record + fields: + submitter_name: string + submitter_address: string? + originating_lab: string + lab_address: string? + provider_sample_id: string? + submitter_sample_id: string? + authors: string? + submitter_id: string? - name: MainSchema type: record documentRoot: true fields: - sampleInformation: sampleInformationSchema - InstituteInformation: InstituteInformationSchema - SubmitterInformation: SubmitterInformationSchema - VirusDetail: VirusDetailSchema + host: hostSchema + sample: sampleSchema + virus: virusSchema? + technology: technologySchema + submitter: submitterSchema
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