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| author | lltommy | 2020-04-19 20:12:21 +0200 |
|---|---|---|
| committer | lltommy | 2020-04-19 20:12:21 +0200 |
| commit | 8f97a0e0d8d2d7e32c396d3b9881d770e58ab832 (patch) | |
| tree | b71a2a1d17ea90338a22b2fff4cd2a4cdbda7d3b /bh20sequploader | |
| parent | 47666ab547da0c2fbdc2026f955d7d7b615d11fb (diff) | |
| download | bh20-seq-resource-8f97a0e0d8d2d7e32c396d3b9881d770e58ab832.tar.gz bh20-seq-resource-8f97a0e0d8d2d7e32c396d3b9881d770e58ab832.tar.lz bh20-seq-resource-8f97a0e0d8d2d7e32c396d3b9881d770e58ab832.zip | |
small updates to the yaml schema, updating the example files
Diffstat (limited to 'bh20sequploader')
| -rw-r--r-- | bh20sequploader/bh20seq-schema.yml | 10 |
1 files changed, 5 insertions, 5 deletions
diff --git a/bh20sequploader/bh20seq-schema.yml b/bh20sequploader/bh20seq-schema.yml index fc80080..c48ebce 100644 --- a/bh20sequploader/bh20seq-schema.yml +++ b/bh20sequploader/bh20seq-schema.yml @@ -13,7 +13,7 @@ $graph: type: record fields: host_species: - doc: Host species as defined in NCBITaxon (e.g. http://purl.obolibrary.org/obo/NCBITaxon_9606 for Homo sapiens) + doc: Host species as defined in NCBITaxon, e.g. http://purl.obolibrary.org/obo/NCBITaxon_9606 for Homo sapiens type: string jsonldPredicate: _id: http://www.ebi.ac.uk/efo/EFO_0000532 @@ -45,7 +45,7 @@ $graph: type: string? jsonldPredicate: http://purl.obolibrary.org/obo/NCIT_C25688 host_treatment: - doc: Process in which the act is intended to modify or alter + doc: Process in which the act is intended to modify or alter host status type: string? jsonldPredicate: _id: http://www.ebi.ac.uk/efo/EFO_0000727 @@ -74,12 +74,12 @@ $graph: jsonldPredicate: _id: http://semanticscience.org/resource/SIO_001167 specimen_source: - doc: A specimen that derives from an anatomical part or substance arising from an organism, e.g. tissue, organ + doc: Method how the specimen was derived as NCIT IRI, e.g. http://purl.obolibrary.org/obo/NCIT_C155831 (=nasopharyngeal swab) type: string? jsonldPredicate: _id: http://purl.obolibrary.org/obo/OBI_0001479 specimen_source2: - doc: A specimen that derives from an anatomical part or substance arising from an organism, e.g. tissue, organ + doc: Method how the specimen was derived as NCIT IRI, e.g. http://purl.obolibrary.org/obo/NCIT_C155835 (=throat swabb) type: string? jsonldPredicate: _id: http://purl.obolibrary.org/obo/OBI_0001479 @@ -89,7 +89,7 @@ $graph: jsonldPredicate: _id: http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C25164 collection_location: - doc: Geographical location where the sample was collected as Gazetteer (https://www.ebi.ac.uk/ols/ontologies/gaz) reference, e.g. http://purl.obolibrary.org/obo/GAZ_00002845 (China) + doc: Geographical location where the sample was collected as wikidata reference, e.g. http://www.wikidata.org/entity/Q148 (China) type: string? jsonldPredicate: _id: http://purl.obolibrary.org/obo/GAZ_00000448 |