| Age | Commit message (Expand) | Author |
|---|
| 2021-01-08 | sample_id in the FASTA has to match the sample_id in the YAMLyamlfa2ttl | AndreaGuarracino |
| 2021-01-08 | added check_metadata workflow and script | AndreaGuarracino |
| 2021-01-08 | remove old fields from esr_example.yaml | AndreaGuarracino |
| 2021-01-07 | made minimal_metadata_example.yaml and maximum_metadata_example.yaml valid | AndreaGuarracino |
| 2021-01-07 | Merge branch 'master' into yamlfa2ttl | AndreaGuarracino |
| 2021-01-07 | fixed comments in the example yaml files | AndreaGuarracino |
| 2021-01-07 | added check_sequence workflow and script | AndreaGuarracino |
| 2021-01-07 | Merge pull request #121 from BonfaceKilz/chore/add-extra-tab-for-all-feeds•••Chore/add extra tab for all feeds | Pjotr Prins |
| 2021-01-07 | Allow for xml and xml.gz files | Pjotr Prins |
| 2021-01-06 | cleaned utils.py | AndreaGuarracino |
| 2021-01-06 | avoided using resource_stream, now check_format.py works in CWL | AndreaGuarracino |
| 2021-01-06 | Pubseq fetch: sometimes a request times out. So repeat with intervals. | Pjotr Prins |
| 2021-01-05 | Add extra tab to display all items | BonfaceKilz |
| 2021-01-05 | cleaning update-from-genbank.py; removed unused import from genbank-fetch-ids.py | AndreaGuarracino |
| 2021-01-05 | Pass extra param that contains all news items to the template•••* bh20simplewebuploader/main.py (send_home): Add extra all_items when
rendering the template.
| BonfaceKilz |
| 2021-01-05 | cleaning genbank-fetch-ids.py | AndreaGuarracino |
| 2021-01-05 | added check_format workflow and script | AndreaGuarracino |
| 2021-01-05 | Fetching fixes | Pjotr Prins |
| 2021-01-05 | Add option for fetching fasta | Pjotr Prins |
| 2021-01-05 | fetch: do a straight dump of the original record | Pjotr Prins |
| 2021-01-05 | fetches original metadata from PubSeq/Arvados | Pjotr Prins |
| 2021-01-05 | web: show https | Pjotr Prins |
| 2021-01-05 | api: more cleanup | Pjotr Prins |
| 2021-01-05 | API: fix returned record to include original metadata | Pjotr Prins |
| 2021-01-05 | Rename | Pjotr Prins |
| 2021-01-04 | created placeholder for the YAML+FASTA to TTL workflow | AndreaGuarracino |
| 2021-01-04 | mapping: no longer requires specimen file for genbank output | Pjotr Prins |
| 2021-01-04 | Removing refs. No point in guessing terms | Pjotr Prins |
| 2021-01-04 | mapping sample_species using regex | Pjotr Prins |
| 2021-01-04 | Started on normalization | Pjotr Prins |
| 2021-01-03 | genbank: specimen source | Pjotr Prins |
| 2021-01-03 | genbank: more or less complete. Need to add collection method | Pjotr Prins |
| 2021-01-03 | genbank: deal with host, sex and age | Pjotr Prins |
| 2021-01-03 | genbank: technology parsing | Pjotr Prins |
| 2021-01-03 | genbank: submitter info | Pjotr Prins |
| 2021-01-03 | genbank: get authors | Pjotr Prins |
| 2021-01-03 | Move reference code to different file so it does not break python | Pjotr Prins |
| 2021-01-02 | GenBank date parsing | Pjotr Prins |
| 2021-01-02 | transform-genbank-xml2yamlfa.py refactoring | Pjotr Prins |
| 2021-01-02 | transform-genbank-xml2yamlfa.py rewrite | Pjotr Prins |
| 2021-01-01 | genbank: minor fixes | Pjotr Prins |
| 2021-01-01 | gzip output | Pjotr Prins |
| 2021-01-01 | update-from-genbank.py | Pjotr Prins |
| 2021-01-01 | genbank-fetch-ids.py | Pjotr Prins |
| 2021-01-01 | genbank-fetch-ids | Pjotr Prins |
| 2021-01-01 | genbank: cleaning up | Pjotr Prins |
| 2021-01-01 | genbank-fetch-ids simple call | Pjotr Prins |
| 2021-01-01 | sparql: make use of pattern matching | Pjotr Prins |
| 2020-12-31 | Add comment | Pjotr Prins |
| 2020-12-31 | Improve SPARQL query and comments | Pjotr Prins |
