index
:
bh20-seq-resource
analysis-refactor
fasta-subset-from-query
generate-cwl
master
new_assembly_method_field
pangenome_workflow_abpoa
upload-download-status
uuid-for-resource
yamlfa2ttl
Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis
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analysis-refactor
Add "validated" and "running workflows" tables to status
Peter Amstutz
4 years
fasta-subset-from-query
Extract PDH from result and construct URIs from that
Peter Amstutz
4 years
generate-cwl
Use default output of pipeline
Arun Isaac
4 years
master
Jetson test sequence
Pjotr Prins
4 years
new_assembly_method_field
added the assembly_method field to distinguish de-novo assemblies from refere...
AndreaGuarracino
4 years
pangenome_workflow_abpoa
abPOA works better starting from shorter sequences
AndreaGuarracino
4 years
upload-download-status
Give uploader an option to trust local validation (for batch imports)
Peter Amstutz
4 years
uuid-for-resource
Use arvados uuids for RDF subjects.
Peter Amstutz
4 years
yamlfa2ttl
sample_id in the FASTA has to match the sample_id in the YAML
AndreaGuarracino
4 years
Age
Commit message
Author
2021-01-08
sample_id in the FASTA has to match the sample_id in the YAML
yamlfa2ttl
AndreaGuarracino
2021-01-08
added check_metadata workflow and script
AndreaGuarracino
2021-01-08
remove old fields from esr_example.yaml
AndreaGuarracino
2021-01-07
made minimal_metadata_example.yaml and maximum_metadata_example.yaml valid
AndreaGuarracino
2021-01-07
Merge branch 'master' into yamlfa2ttl
AndreaGuarracino
2021-01-07
fixed comments in the example yaml files
AndreaGuarracino
2021-01-07
added check_sequence workflow and script
AndreaGuarracino
2021-01-07
Merge pull request #121 from BonfaceKilz/chore/add-extra-tab-for-all-feeds
Pjotr Prins
2021-01-07
Allow for xml and xml.gz files
Pjotr Prins
2021-01-06
cleaned utils.py
AndreaGuarracino
[...]