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-rw-r--r--bh20sequploader/qc_metadata.py5
1 files changed, 4 insertions, 1 deletions
diff --git a/bh20sequploader/qc_metadata.py b/bh20sequploader/qc_metadata.py
index fbfd286..9122ace 100644
--- a/bh20sequploader/qc_metadata.py
+++ b/bh20sequploader/qc_metadata.py
@@ -8,7 +8,9 @@ import traceback
from rdflib import Graph, Namespace
from pyshex.evaluate import evaluate
+
def qc_metadata(metadatafile):
+ log = logging.getLogger(__name__ )
schema_resource = pkg_resources.resource_stream(__name__, "bh20seq-schema.yml")
cache = {"https://raw.githubusercontent.com/arvados/bh20-seq-resource/master/bh20sequploader/bh20seq-schema.yml": schema_resource.read().decode("utf-8")}
(document_loader,
@@ -28,10 +30,11 @@ def qc_metadata(metadatafile):
rslt, reason = evaluate(g, shex, doc["id"], "https://raw.githubusercontent.com/arvados/bh20-seq-resource/master/bh20sequploader/bh20seq-shex.rdf#submissionShape")
if not rslt:
+ log.debug(reason)
print(reason)
return rslt
except Exception as e:
traceback.print_exc()
- logging.warn(e)
+ log.warn(e)
return False