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| author | Pjotr Prins | 2020-05-28 10:44:42 -0500 |
|---|---|---|
| committer | Pjotr Prins | 2020-05-28 10:44:42 -0500 |
| commit | 2bcf4c45eaba42b36cff93c9cd5e461baaf3eae1 (patch) | |
| tree | 2e8e789fb0261d0230db76b2f00e50ec40d83291 /bh20sequploader/qc_metadata.py | |
| parent | 64d832fb49d8ef3799290ec5bd67c69c2c87e5d6 (diff) | |
| download | bh20-seq-resource-2bcf4c45eaba42b36cff93c9cd5e461baaf3eae1.tar.gz bh20-seq-resource-2bcf4c45eaba42b36cff93c9cd5e461baaf3eae1.tar.lz bh20-seq-resource-2bcf4c45eaba42b36cff93c9cd5e461baaf3eae1.zip | |
Web: debugging metadata submission
Diffstat (limited to 'bh20sequploader/qc_metadata.py')
| -rw-r--r-- | bh20sequploader/qc_metadata.py | 5 |
1 files changed, 4 insertions, 1 deletions
diff --git a/bh20sequploader/qc_metadata.py b/bh20sequploader/qc_metadata.py index fbfd286..9122ace 100644 --- a/bh20sequploader/qc_metadata.py +++ b/bh20sequploader/qc_metadata.py @@ -8,7 +8,9 @@ import traceback from rdflib import Graph, Namespace from pyshex.evaluate import evaluate + def qc_metadata(metadatafile): + log = logging.getLogger(__name__ ) schema_resource = pkg_resources.resource_stream(__name__, "bh20seq-schema.yml") cache = {"https://raw.githubusercontent.com/arvados/bh20-seq-resource/master/bh20sequploader/bh20seq-schema.yml": schema_resource.read().decode("utf-8")} (document_loader, @@ -28,10 +30,11 @@ def qc_metadata(metadatafile): rslt, reason = evaluate(g, shex, doc["id"], "https://raw.githubusercontent.com/arvados/bh20-seq-resource/master/bh20sequploader/bh20seq-shex.rdf#submissionShape") if not rslt: + log.debug(reason) print(reason) return rslt except Exception as e: traceback.print_exc() - logging.warn(e) + log.warn(e) return False |