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-rw-r--r--workflows/pangenome-generate/pangenome-generate.cwl3
1 files changed, 3 insertions, 0 deletions
diff --git a/workflows/pangenome-generate/pangenome-generate.cwl b/workflows/pangenome-generate/pangenome-generate.cwl
index 0cb1368..6794e2d 100644
--- a/workflows/pangenome-generate/pangenome-generate.cwl
+++ b/workflows/pangenome-generate/pangenome-generate.cwl
@@ -18,6 +18,9 @@ outputs:
odgiRDF:
type: File
outputSource: odgi2rdf/rdf
+ readsMergeDedup:
+ type: File
+ outputSource: dedup/readsMergeDedup
mergedMetadata:
type: File
outputSource: mergeMetadata/merged