diff options
| -rw-r--r-- | bh20simplewebuploader/static/image/CWL-Logo-Header.png | bin | 0 -> 4771 bytes | |||
| -rw-r--r-- | bh20simplewebuploader/templates/form.html | 87 |
2 files changed, 57 insertions, 30 deletions
diff --git a/bh20simplewebuploader/static/image/CWL-Logo-Header.png b/bh20simplewebuploader/static/image/CWL-Logo-Header.png Binary files differnew file mode 100644 index 0000000..86855b4 --- /dev/null +++ b/bh20simplewebuploader/static/image/CWL-Logo-Header.png diff --git a/bh20simplewebuploader/templates/form.html b/bh20simplewebuploader/templates/form.html index d98c701..1b042bf 100644 --- a/bh20simplewebuploader/templates/form.html +++ b/bh20simplewebuploader/templates/form.html @@ -10,8 +10,9 @@ background-color: #F9EDE1; } - h1, h4 { + h1, h2, h3, h4 { font-family: 'Roboto Slab', serif; + color: darkblue; } h1 { @@ -23,9 +24,9 @@ font-style: italic; } .header { + background-color: white; margin: 0 auto; padding: 20px; - color: blue; text-align: center; height: 150px; } @@ -34,7 +35,7 @@ float: right; } - p, form { + p, form, .about, .footer { font-family: 'Raleway', sans-serif; line-height: 1.5; } @@ -48,10 +49,21 @@ } .intro { + background-color: lightgrey; margin: 0 auto; padding: 20px; } + .about { + background-color: lightgrey; + margin: 0 auto; + padding: 20px; + } + .footer { + background-color: white; + margin: 0 auto; + } + span.dropt {border-bottom: thin dotted; background: #ffeedd;} span.dropt:hover {text-decoration: none; background: #ffffff; z-index: 6; } @@ -74,10 +86,16 @@ span.dropt:hover {text-decoration: none; background: #ffffff; z-index: 6; } } .fasta-file-select { + padding: 1em; grid-area: b; } .metadata { + padding: 1em; + grid-area: c; + } + .metadata_upload_form { + padding: 1em; grid-area: c; } @@ -127,12 +145,12 @@ span.dropt:hover {text-decoration: none; background: #ffffff; z-index: 6; } <meta charset="UTF-8"> <link href="https://fonts.googleapis.com/css2?family=Raleway:wght@500&family=Roboto+Slab&display=swap" rel="stylesheet"> <meta name="viewport" content="width=device-width, initial-scale=1"> - <title>Web Uploader for Public SARS-CoV-2 Sequence Resource</title> + <title>Web uploader for Public SARS-CoV-2 Sequence Resource</title> </head> <body> <section class="header"> <div class="logo"><a href="https://github.com/tylermorganwall/coronaobj/"><img src="static/image/coronasmallcomp.gif" width="150" /></a></div> - <h1>Web Uploader for Public SARS-CoV-2 Sequence Resource</h1> + <h1>Web uploader for Public SARS-CoV-2 Sequence Resource</h1> <small>Disabled until we got everything wired up</small> @@ -148,7 +166,7 @@ span.dropt:hover {text-decoration: none; background: #ffffff; z-index: 6; } <a href="https://workbench.lugli.arvadosapi.com/collections/lugli-4zz18-z513nlpqm03hpca">download</a>! Your uploaded sequence will automatically be processed and incorporated into the public pangenome with - metadata. All data is published under + metadata using worklows from the High Performance Open Biology Lab defined <a href="https://github.com/hpobio-lab/viral-analysis/tree/master/cwl/pangenome-generate">here</a>. All data is published under a <a href="https://creativecommons.org/licenses/by/4.0/">Creative Commons 4.0 attribution license</a> (CC-BY-4.0). You can take the published (GFA/RDF/FASTA) data and store it in @@ -163,27 +181,28 @@ span.dropt:hover {text-decoration: none; background: #ffffff; z-index: 6; } <input type="file" id="fasta" name="fasta" accept=".fa,.fasta,.fna,.fq" required> <br> <small> - Note that by uploading your data you automatically agree to a <a hef="https://creativecommons.org/licenses/by/4.0/">CC-BY-4.0 license</a>. </small> + Note that by uploading your data you automatically agree to a <a href="https://creativecommons.org/licenses/by/4.0/">CC-BY-4.0 license</a>. </small> </div> <div class="metadata"> - <label>Select metadata submission method:</label> - <br> - <input type="radio" id="metadata_form" name="metadata_type" value="fill" onchange="setMode()" checked required> - <label for="metadata_form">Fill in metadata manually</label> - <input type="radio" id="metadata_upload" name="metadata_type" value="upload" onchange="setMode()" required> - <label for="metadata_upload">Upload metadata file</label> - <br> - <small>Make sure the metadata has submitter attribution details.</small> - </div> - - <div id="metadata_upload_form_spot"> + <label>Select metadata submission method:</label> + <br> + <input type="radio" id="metadata_form" name="metadata_type" value="fill" onchange="setMode()" checked required> + <label for="metadata_form">Fill in metadata manually</label> + <input type="radio" id="metadata_upload" name="metadata_type" value="upload" onchange="setMode()" required> + <label for="metadata_upload">Upload metadata file</label> + <br> + <small>Make sure the metadata has submitter attribution details.</small> + + <div id="metadata_upload_form_spot"> <div id="metadata_upload_form"> - <label for="metadata">Select JSON or YAML metadata file following <a href="https://github.com/arvados/bh20-seq-resource/blob/master/bh20sequploader/bh20seq-schema.yml" target="_blank">this schema</a> and <a href="https://github.com/arvados/bh20-seq-resource/blob/master/example/metadata.yaml" target="_blank">example</a> (max 50K):</label> - <br> - <input type="file" id="metadata" name="metadata" accept=".json,.yml,.yaml" required> - <br> + <br> + <label for="metadata">Select JSON or YAML metadata file following <a href="https://github.com/arvados/bh20-seq-resource/blob/master/bh20sequploader/bh20seq-schema.yml" target="_blank">this schema</a> and <a href="https://github.com/arvados/bh20-seq-resource/blob/master/example/metadata.yaml" target="_blank">example</a> (max 50K):</label> + <br> + <input type="file" id="metadata" name="metadata" accept=".json,.yml,.yaml" required> + <br> </div> + </div> </div> <div id="metadata_fill_form_spot"> @@ -220,9 +239,10 @@ span.dropt:hover {text-decoration: none; background: #ffffff; z-index: 6; } </section> <hr> <br> -<div class="intro"> +<div class="about"> <h3>ABOUT</h3> - <small>This a public repository created at the COVID-19 BioHackathon + <p> + This a public repository created at the COVID-19 BioHackathon that has a low barrier to entry for uploading sequence data using best practices. I.e., data is published with a creative commons 4.0 (CC-4.0) license with metadata using state-of-the art @@ -233,19 +253,26 @@ span.dropt:hover {text-decoration: none; background: #ffffff; z-index: 6; } pandemic. To contribute data simply upload it! To contribute code and/or workflows see the <a href="https://github.com/arvados/bh20-seq-resource">project - repository</a>. For more information see the <a href="https://github.com/arvados/bh20-seq-resource/blob/master/paper/paper.md">paper</a> (WIP).</small> -</p> + repository</a>. For more information see the <a href="https://github.com/arvados/bh20-seq-resource/blob/master/paper/paper.md">paper</a> (WIP). + </p> <br> +</div> <hr> - <a href="https://arvados.org/"><img src="static/image/arvados-logo.png"></a> +<div class="footer"> + <a href="https://arvados.org/"><img src="static/image/arvados-logo.png" height="80"></a> + <a href="https://www.commonwl.org/"><img src="static/image/CWL-Logo-Header.png" height="80"></a> + + <a href="https://github.com/virtual-biohackathons/covid-19-bh20"> + <img src="static/image/covid19biohackathon.png" align="right" height="80"></a> - <small><a href="https://github.com/arvados/bh20-seq-resource">Source</a> · Made for <a href="https://github.com/virtual-biohackathons/covid-19-bh20">COVID-19-BH20</a> | For more information E-mail pjotr.public444 at thebird.nl + <center> + <small><a href="https://github.com/arvados/bh20-seq-resource">Source code</a> · Powered by <a href="https://www.commonwl.org/">Common Workflow Language</a> & <a href="https://arvados.org/">Arvados</a>; Made for <a href="https://github.com/virtual-biohackathons/covid-19-bh20">COVID-19-BH20</a> </small> + </center> - <a href="https://github.com/virtual-biohackathons/covid-19-bh20"> - <img src="static/image/covid19biohackathon.png" align="right" width="300"></a> +</div> <script type="text/javascript"> let uploadForm = document.getElementById('metadata_upload_form') |
