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-rw-r--r--bh20sequploader/bh20seq-schema.yml30
1 files changed, 24 insertions, 6 deletions
diff --git a/bh20sequploader/bh20seq-schema.yml b/bh20sequploader/bh20seq-schema.yml
index 38cfb48..fd9e854 100644
--- a/bh20sequploader/bh20seq-schema.yml
+++ b/bh20sequploader/bh20seq-schema.yml
@@ -3,14 +3,20 @@ $graph:
- name: hostSchema
type: record
fields:
+ host_species:
+ type: string
+ jsonldPredicate:
+ _id: http://www.ebi.ac.uk/efo/EFO_0000532
host_id: string
- host_species: string
host_common_name: string?
host_sex: string?
host_age: int?
host_age_unit: string?
host_health_status: string?
- host_treatment: string?
+ host_treatment:
+ type: string?
+ jsonldPredicate:
+ _id: http://www.ebi.ac.uk/efo/EFO_0000727
additional_host_information: string?
- name: sampleSchema
@@ -20,7 +26,10 @@ $graph:
collecting_institution: string
specimen_source: string?
collection_date: string?
- collection_location: string?
+ collection_location:
+ type: string?
+ jsonldPredicate:
+ _id: https://schema.org/fromLocation
sample_storage_conditions: string?
additional_collection_information: string?
@@ -33,9 +42,18 @@ $graph:
- name: technologySchema
type: record
fields:
- sample_sequencing_technology: string
- sequence_assembly_method: string?
- sequencing_coverage: string?
+ sample_sequencing_technology:
+ type: string
+ jsonldPredicate:
+ _id: http://www.ebi.ac.uk/efo/EFO_0000532
+ sequence_assembly_method:
+ type: string?
+ jsonldPredicate:
+ _id: http://www.ebi.ac.uk/efo/EFO_0002699
+ sequencing_coverage:
+ type: string?
+ jsonldPredicate:
+ _id: http://purl.obolibrary.org/obo/FLU_0000848
- name: submitterSchema
type: record