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-rw-r--r--bh20simplewebuploader/main.py5
-rw-r--r--bh20simplewebuploader/templates/banner.html2
-rw-r--r--bh20simplewebuploader/templates/blurb.html13
-rw-r--r--bh20simplewebuploader/templates/footer.html2
-rw-r--r--bh20simplewebuploader/templates/home.html78
-rw-r--r--bh20simplewebuploader/templates/menu.html1
-rw-r--r--doc/web/about.html138
-rw-r--r--doc/web/about.org2
-rw-r--r--doc/web/contact.html286
-rw-r--r--doc/web/contact.org20
10 files changed, 439 insertions, 108 deletions
diff --git a/bh20simplewebuploader/main.py b/bh20simplewebuploader/main.py
index 62ec5cd..3dbe49a 100644
--- a/bh20simplewebuploader/main.py
+++ b/bh20simplewebuploader/main.py
@@ -658,6 +658,11 @@ def about_page():
buf = get_html_body('doc/web/about.html','https://github.com/arvados/bh20-seq-resource/blob/master/doc/web/about.org')
return render_template('about.html',menu='ABOUT',embed=buf)
+@app.route('/contact')
+def contact_page():
+ buf = get_html_body('doc/web/contact.html','https://github.com/arvados/bh20-seq-resource/blob/master/doc/web/contact.org')
+ return render_template('about.html',menu='CONTACT',embed=buf)
+
## Dynamic API functions starting here
## This is quick and dirty for now, just to get something out and demonstrate the queries
## Feel free to rename the functions/endpoints, feel free to process result so we get nicer JSON
diff --git a/bh20simplewebuploader/templates/banner.html b/bh20simplewebuploader/templates/banner.html
index 8f2b09a..32db983 100644
--- a/bh20simplewebuploader/templates/banner.html
+++ b/bh20simplewebuploader/templates/banner.html
@@ -2,6 +2,6 @@
<div class="logo"><a href="http://covid-19.genenetwork.org/"><img src="static/image/coronasmallcomp.gif" width="150" title="COVID-19 image by Tyler Morgan-Wall"></a></div>
<h1>COVID-19 PubSeq: Public SARS-CoV-2 Sequence Resource</h1>
- <p>Database contains <span id="Counter"></span> public sequences!</p>
+ <p><span id="Counter"></span> public sequences ready for <a href="/download">download</a>!</p>
</section>
diff --git a/bh20simplewebuploader/templates/blurb.html b/bh20simplewebuploader/templates/blurb.html
index 8b65afa..e58bf78 100644
--- a/bh20simplewebuploader/templates/blurb.html
+++ b/bh20simplewebuploader/templates/blurb.html
@@ -6,7 +6,15 @@
virus strains. PubSeq allows anyone to upload sequence material in
the form of FASTA or fastq files with accompanying metadata through
a web interface or REST API.
-
+</p>
+<p>
+ PubSeq accepts sequence material from all sources (notably in FASTA
+ format). PubSeq also provides specific workflows for Oxford Nanopore
+ analysis in FASTQ format. If you need help analysing FAST5 or FASTQ
+ data, feel free to <a href="/contact">contact us</a>! Also for
+ commercial support and Cloud pipelines you can reach out to us.
+</p>
+<p>
COVID-19 PubSeq is also a repository for sequences with a low
barrier to entry for uploading sequence data using best practices,
including <a href="https://en.wikipedia.org/wiki/FAIR_data">FAIR
@@ -14,7 +22,8 @@
standards and, perhaps most importantly, providing standardised
workflows that get triggered on upload, so that results are
immediately available in standardised data formats.
-
+</p>
+<p>
Your uploaded sequence will automatically be processed and
incorporated into the public pangenome with metadata using worklows
from the High Performance Open Biology Lab
diff --git a/bh20simplewebuploader/templates/footer.html b/bh20simplewebuploader/templates/footer.html
index 3a405de..f78e8bf 100644
--- a/bh20simplewebuploader/templates/footer.html
+++ b/bh20simplewebuploader/templates/footer.html
@@ -19,7 +19,7 @@
<a href="static/image/BCC2020_AndreaGuarracino_COVID19PubSeq_Poster.pdf">
<img src="static/image/BCC2020_AndreaGuarracino_COVID19PubSeq_Poster.png" alt="BCC2020 COVID19 PubSeq Poster"/>
</a>
- <h3>SPONSORS</h3>
+ <h3>OUR SPONSORS</h3>
<div class="sponsorimg">
<a href="https://github.com/virtual-biohackathons/covid-19-bh20">
<img src="static/image/covid19biohackathon.png"></a>
diff --git a/bh20simplewebuploader/templates/home.html b/bh20simplewebuploader/templates/home.html
index bede611..367f6e2 100644
--- a/bh20simplewebuploader/templates/home.html
+++ b/bh20simplewebuploader/templates/home.html
@@ -8,40 +8,50 @@
<section>
<div class="intro">
- <p>
- Make your sequence
- data <a href="https://en.wikipedia.org/wiki/FAIR_data">FAIR</a>. Upload
- your SARS-CoV-2 sequence (FASTA or FASTQ
- formats) with metadata (JSONLD) to
- the <a href="/about">public sequence
- resource</a>. The upload will trigger a
- recompute with all available sequences into a
- Pangenome available for
- <a href="/download">download</a>!
- </p>
- <p>
- Your uploaded sequence will automatically be
- processed and incorporated into the public
- pangenome with metadata using worklows from
- the High Performance Open Biology Lab
- defined <a href="https://github.com/hpobio-lab/viral-analysis/tree/master/cwl/pangenome-generate">here</a>. All
- data is published under
- a <a href="https://creativecommons.org/licenses/by/4.0/">Creative
- Commons license</a> You can take the published
- (GFA/RDF/FASTA) data and store it in a triple
- store for further processing. Clinical
- data can be stored
- securely
- at <a href="https://redcap-covid19.elixir-luxembourg.org/redcap/">REDCap</a>.
- </p>
- <p>
- Note that form fields contain
- web <a href="https://en.wikipedia.org/wiki/Web_Ontology_Language">ontology
- URI's</a>
- for <a href="https://en.wikipedia.org/wiki/Wikipedia:Disambiguation">disambiguation</a>
- and machine readable metadata. For examples of
- use, see the <a href="/blog">BLOG</a>.
- </p>
+
+ <p>
+ COVID-19 PubSeq is a free and open online
+ bioinformatics public sequence resource with
+ on-the-fly analysis of sequenced SARS-CoV-2
+ samples that allows for a quick turnaround in
+ identification of new virus strains. PubSeq allows
+ anyone to upload sequence material in the form of
+ FASTA or fastq files with accompanying metadata
+ through the <a href="/upload">web interface</a> or <a href="/apidoc">REST API</a>.
+ </p>
+ <p>
+ Make your sequence
+ data <a href="https://en.wikipedia.org/wiki/FAIR_data">FAIR</a>. Upload
+ your SARS-CoV-2 sequence (FASTA or FASTQ formats)
+ with simple metadata (JSONLD) to
+ the <a href="/about">public sequence
+ resource</a>. The upload will trigger a recompute
+ with all available sequences into a Pangenome
+ available for
+ <a href="/download">download</a>!
+ </p>
+ <p>
+ Your uploaded sequence will automatically be
+ processed and incorporated into the public
+ pangenome with metadata using worklows from the
+ High Performance Open Biology Lab
+ defined <a href="https://github.com/hpobio-lab/viral-analysis/tree/master/cwl/pangenome-generate">here</a>. All
+ data is published under
+ a <a href="https://creativecommons.org/licenses/by/4.0/">Creative
+ Commons license</a> You can take the published
+ (GFA/RDF/FASTA) data and store it in a triple
+ store for further processing. Clinical data can
+ be stored securely
+ at <a href="https://redcap-covid19.elixir-luxembourg.org/redcap/">REDCap</a>.
+ </p>
+ <p>
+ Note that form fields contain
+ web <a href="https://en.wikipedia.org/wiki/Web_Ontology_Language">ontology
+ URI's</a>
+ for <a href="https://en.wikipedia.org/wiki/Wikipedia:Disambiguation">disambiguation</a>
+ and machine readable metadata. For examples of
+ use, see the <a href="/blog">BLOG</a>.
+ </p>
</div>
</section>
diff --git a/bh20simplewebuploader/templates/menu.html b/bh20simplewebuploader/templates/menu.html
index d408171..5d5fdc8 100644
--- a/bh20simplewebuploader/templates/menu.html
+++ b/bh20simplewebuploader/templates/menu.html
@@ -8,6 +8,7 @@
<a href="/export" class="{{ 'active' if menu=='EXPORT' }}">EXPORT</a>
<a href="/blog" class="{{ 'active' if menu=='BLOG' }}">BLOG</a>
<a href="/about" class="{{ 'active' if menu=='ABOUT' }}">ABOUT</a>
+ <a href="/contact" class="{{ 'active' if menu=='CONTACT' }}">CONTACT</a>
<a href="javascript:void(0);" class="icon" onclick="myFunction()">
<i class="fa fa-bars"></i>
</a>
diff --git a/doc/web/about.html b/doc/web/about.html
index a4ab186..f6d1761 100644
--- a/doc/web/about.html
+++ b/doc/web/about.html
@@ -3,7 +3,7 @@
"http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
<head>
-<!-- 2020-08-22 Sat 03:48 -->
+<!-- 2020-08-22 Sat 04:42 -->
<meta http-equiv="Content-Type" content="text/html;charset=utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1" />
<title>About/FAQ</title>
@@ -234,34 +234,34 @@ for the JavaScript code in this tag.
<h2>Table of Contents</h2>
<div id="text-table-of-contents">
<ul>
-<li><a href="#org99c4553">1. What is the 'public sequence resource' about?</a></li>
-<li><a href="#orga3b6187">2. Presentations</a></li>
-<li><a href="#orgeb109f2">3. Who created the public sequence resource?</a></li>
-<li><a href="#org631e2c7">4. How does the public sequence resource compare to other data resources?</a></li>
-<li><a href="#org319a852">5. Why should I upload my data here?</a></li>
-<li><a href="#org08313ab">6. Why should I not upload by data here?</a></li>
-<li><a href="#orgc4d533c">7. How does the public sequence resource work?</a></li>
-<li><a href="#org345c019">8. Who uses the public sequence resource?</a></li>
-<li><a href="#orgd764100">9. How can I contribute?</a></li>
-<li><a href="#orgd3c405f">10. Is this about open data?</a></li>
-<li><a href="#orga0a0123">11. Is this about free software?</a></li>
-<li><a href="#org37a9339">12. How do I upload raw data?</a></li>
-<li><a href="#org7e7ca3e">13. How do I change metadata?</a></li>
-<li><a href="#org8a0a2be">14. How do I change the work flows?</a></li>
-<li><a href="#orgd811284">15. How do I change the source code?</a></li>
-<li><a href="#org8c01c1e">16. Should I choose CC-BY or CC0?</a></li>
-<li><a href="#orgae29ab5">17. Are there also variant in the RDF databases? *</a></li>
-<li><a href="#org2fe4b9b">18. How do I deal with private data and privacy?</a></li>
-<li><a href="#orgeb974e3">19. Do you have any checks or concerns if human sequence accidentally submitted to your service as part of a fastq? *</a></li>
-<li><a href="#orgd6002f0">20. Does PubSeq support only SARS-CoV-2 data? *</a></li>
-<li><a href="#orgdfdd5c4">21. How do I communicate with you?</a></li>
-<li><a href="#orgdde7304">22. Who are the sponsors?</a></li>
+<li><a href="#org43f5d1e">1. What is the 'public sequence resource' about?</a></li>
+<li><a href="#org706e720">2. Presentations</a></li>
+<li><a href="#orge3b0114">3. Who created the public sequence resource?</a></li>
+<li><a href="#org6b86244">4. How does the public sequence resource compare to other data resources?</a></li>
+<li><a href="#org1030148">5. Why should I upload my data here?</a></li>
+<li><a href="#orgdf90c2c">6. Why should I not upload by data here?</a></li>
+<li><a href="#org3294b2e">7. How does the public sequence resource work?</a></li>
+<li><a href="#orgfca20f4">8. Who uses the public sequence resource?</a></li>
+<li><a href="#org0f602e3">9. How can I contribute?</a></li>
+<li><a href="#org441ff7c">10. Is this about open data?</a></li>
+<li><a href="#org42ceb37">11. Is this about free software?</a></li>
+<li><a href="#org1c3275d">12. How do I upload raw data?</a></li>
+<li><a href="#org7cb05f2">13. How do I change metadata?</a></li>
+<li><a href="#org875e3c9">14. How do I change the work flows?</a></li>
+<li><a href="#orgf485768">15. How do I change the source code?</a></li>
+<li><a href="#orgae7cb27">16. Should I choose CC-BY or CC0?</a></li>
+<li><a href="#org765d1a7">17. Are there also variant in the RDF databases? *</a></li>
+<li><a href="#org66263d5">18. How do I deal with private data and privacy?</a></li>
+<li><a href="#org6cd833b">19. Do you have any checks or concerns if human sequence accidentally submitted to your service as part of a fastq? *</a></li>
+<li><a href="#orge8f395f">20. Does PubSeq support only SARS-CoV-2 data? *</a></li>
+<li><a href="#org8f5ae93">21. How do I communicate with you?</a></li>
+<li><a href="#org15ea9a8">22. Who are the sponsors?</a></li>
</ul>
</div>
</div>
-<div id="outline-container-org99c4553" class="outline-2">
-<h2 id="org99c4553"><span class="section-number-2">1</span> What is the 'public sequence resource' about?</h2>
+<div id="outline-container-org43f5d1e" class="outline-2">
+<h2 id="org43f5d1e"><span class="section-number-2">1</span> What is the 'public sequence resource' about?</h2>
<div class="outline-text-2" id="text-1">
<p>
The <b>public sequence resource</b> aims to provide a generic and useful
@@ -272,8 +272,8 @@ sequence comparison and protein prediction.
</div>
</div>
-<div id="outline-container-orga3b6187" class="outline-2">
-<h2 id="orga3b6187"><span class="section-number-2">2</span> Presentations</h2>
+<div id="outline-container-org706e720" class="outline-2">
+<h2 id="org706e720"><span class="section-number-2">2</span> Presentations</h2>
<div class="outline-text-2" id="text-2">
<p>
We presented at the BOSC 2020 Have a look at the <a href="https://bcc2020.sched.com/event/coLw">video</a> (<a href="https://drive.google.com/file/d/1skXHwVKM_gl73-_4giYIOQ1IlC5X5uBo/view?usp=sharing">alternative
@@ -282,8 +282,8 @@ link</a>) and the <a href="https://drive.google.com/file/d/1vyEgfvSqhM9yIwWZ6Iys
</div>
</div>
-<div id="outline-container-orgeb109f2" class="outline-2">
-<h2 id="orgeb109f2"><span class="section-number-2">3</span> Who created the public sequence resource?</h2>
+<div id="outline-container-orge3b0114" class="outline-2">
+<h2 id="orge3b0114"><span class="section-number-2">3</span> Who created the public sequence resource?</h2>
<div class="outline-text-2" id="text-3">
<p>
The <b>public sequence resource</b> is an initiative by <a href="https://github.com/arvados/bh20-seq-resource/graphs/contributors">bioinformatics</a> and
@@ -304,8 +304,8 @@ wrangling experts. Thank you everyone!
</div>
</div>
-<div id="outline-container-org631e2c7" class="outline-2">
-<h2 id="org631e2c7"><span class="section-number-2">4</span> How does the public sequence resource compare to other data resources?</h2>
+<div id="outline-container-org6b86244" class="outline-2">
+<h2 id="org6b86244"><span class="section-number-2">4</span> How does the public sequence resource compare to other data resources?</h2>
<div class="outline-text-2" id="text-4">
<p>
The short version is that we use state-of-the-art practices in
@@ -328,8 +328,8 @@ such as GISAID.
</div>
</div>
-<div id="outline-container-org319a852" class="outline-2">
-<h2 id="org319a852"><span class="section-number-2">5</span> Why should I upload my data here?</h2>
+<div id="outline-container-org1030148" class="outline-2">
+<h2 id="org1030148"><span class="section-number-2">5</span> Why should I upload my data here?</h2>
<div class="outline-text-2" id="text-5">
<ol class="org-ol">
<li>We champion truly shareable data without licensing restrictions - with proper
@@ -360,8 +360,8 @@ multiple resources.
</div>
</div>
-<div id="outline-container-org08313ab" class="outline-2">
-<h2 id="org08313ab"><span class="section-number-2">6</span> Why should I not upload by data here?</h2>
+<div id="outline-container-orgdf90c2c" class="outline-2">
+<h2 id="orgdf90c2c"><span class="section-number-2">6</span> Why should I not upload by data here?</h2>
<div class="outline-text-2" id="text-6">
<p>
Funny question. There are only good reasons to upload your data here
@@ -383,8 +383,8 @@ for bulk uploads!
</div>
</div>
-<div id="outline-container-orgc4d533c" class="outline-2">
-<h2 id="orgc4d533c"><span class="section-number-2">7</span> How does the public sequence resource work?</h2>
+<div id="outline-container-org3294b2e" class="outline-2">
+<h2 id="org3294b2e"><span class="section-number-2">7</span> How does the public sequence resource work?</h2>
<div class="outline-text-2" id="text-7">
<p>
On uploading a sequence with metadata it will automatically be
@@ -395,8 +395,8 @@ using workflows from the High Performance Open Biology Lab defined
</div>
</div>
-<div id="outline-container-org345c019" class="outline-2">
-<h2 id="org345c019"><span class="section-number-2">8</span> Who uses the public sequence resource?</h2>
+<div id="outline-container-orgfca20f4" class="outline-2">
+<h2 id="orgfca20f4"><span class="section-number-2">8</span> Who uses the public sequence resource?</h2>
<div class="outline-text-2" id="text-8">
<p>
The Swiss Institute of Bioinformatics has included this data in
@@ -414,8 +414,8 @@ for monitoring, protein prediction and drug development.
</div>
</div>
-<div id="outline-container-orgd764100" class="outline-2">
-<h2 id="orgd764100"><span class="section-number-2">9</span> How can I contribute?</h2>
+<div id="outline-container-org0f602e3" class="outline-2">
+<h2 id="org0f602e3"><span class="section-number-2">9</span> How can I contribute?</h2>
<div class="outline-text-2" id="text-9">
<p>
You can contribute by submitting sequences, updating metadata, submit
@@ -427,8 +427,8 @@ point.
</div>
</div>
-<div id="outline-container-orgd3c405f" class="outline-2">
-<h2 id="orgd3c405f"><span class="section-number-2">10</span> Is this about open data?</h2>
+<div id="outline-container-org441ff7c" class="outline-2">
+<h2 id="org441ff7c"><span class="section-number-2">10</span> Is this about open data?</h2>
<div class="outline-text-2" id="text-10">
<p>
All data is published under a <a href="https://creativecommons.org/licenses/by/4.0/">Creative Commons 4.0 attribution license</a>
@@ -438,8 +438,8 @@ data and store it for further processing.
</div>
</div>
-<div id="outline-container-orga0a0123" class="outline-2">
-<h2 id="orga0a0123"><span class="section-number-2">11</span> Is this about free software?</h2>
+<div id="outline-container-org42ceb37" class="outline-2">
+<h2 id="org42ceb37"><span class="section-number-2">11</span> Is this about free software?</h2>
<div class="outline-text-2" id="text-11">
<p>
Absolutely. Free software allows for fully reproducible pipelines. You
@@ -448,8 +448,8 @@ can take our workflows and data and run it elsewhere!
</div>
</div>
-<div id="outline-container-org37a9339" class="outline-2">
-<h2 id="org37a9339"><span class="section-number-2">12</span> How do I upload raw data?</h2>
+<div id="outline-container-org1c3275d" class="outline-2">
+<h2 id="org1c3275d"><span class="section-number-2">12</span> How do I upload raw data?</h2>
<div class="outline-text-2" id="text-12">
<p>
We are preparing raw sequence data pipelines (fastq and BAM). The
@@ -464,8 +464,8 @@ assembly variations into consideration. This is all work in progress.
</div>
</div>
-<div id="outline-container-org7e7ca3e" class="outline-2">
-<h2 id="org7e7ca3e"><span class="section-number-2">13</span> How do I change metadata?</h2>
+<div id="outline-container-org7cb05f2" class="outline-2">
+<h2 id="org7cb05f2"><span class="section-number-2">13</span> How do I change metadata?</h2>
<div class="outline-text-2" id="text-13">
<p>
See the <a href="http://covid19.genenetwork.org/blog">http://covid19.genenetwork.org/blog</a>!
@@ -473,8 +473,8 @@ See the <a href="http://covid19.genenetwork.org/blog">http://covid19.genenetwork
</div>
</div>
-<div id="outline-container-org8a0a2be" class="outline-2">
-<h2 id="org8a0a2be"><span class="section-number-2">14</span> How do I change the work flows?</h2>
+<div id="outline-container-org875e3c9" class="outline-2">
+<h2 id="org875e3c9"><span class="section-number-2">14</span> How do I change the work flows?</h2>
<div class="outline-text-2" id="text-14">
<p>
Workflows are on <a href="https://github.com/arvados/bh20-seq-resource/tree/master/workflows">github</a> and can be modified. See also the BLOG
@@ -483,8 +483,8 @@ Workflows are on <a href="https://github.com/arvados/bh20-seq-resource/tree/mast
</div>
</div>
-<div id="outline-container-orgd811284" class="outline-2">
-<h2 id="orgd811284"><span class="section-number-2">15</span> How do I change the source code?</h2>
+<div id="outline-container-orgf485768" class="outline-2">
+<h2 id="orgf485768"><span class="section-number-2">15</span> How do I change the source code?</h2>
<div class="outline-text-2" id="text-15">
<p>
Go to our <a href="https://github.com/arvados/bh20-seq-resource">source code repositories</a>, fork/clone the repository, change
@@ -494,8 +494,8 @@ many PRs we already merged.
</div>
</div>
-<div id="outline-container-org8c01c1e" class="outline-2">
-<h2 id="org8c01c1e"><span class="section-number-2">16</span> Should I choose CC-BY or CC0?</h2>
+<div id="outline-container-orgae7cb27" class="outline-2">
+<h2 id="orgae7cb27"><span class="section-number-2">16</span> Should I choose CC-BY or CC0?</h2>
<div class="outline-text-2" id="text-16">
<p>
Restrictive data licenses are hampering data sharing and reproducible
@@ -511,8 +511,8 @@ In all honesty: we prefer both data and software to be free.
</div>
</div>
-<div id="outline-container-orgae29ab5" class="outline-2">
-<h2 id="orgae29ab5"><span class="section-number-2">17</span> Are there also variant in the RDF databases? *</h2>
+<div id="outline-container-org765d1a7" class="outline-2">
+<h2 id="org765d1a7"><span class="section-number-2">17</span> Are there also variant in the RDF databases? *</h2>
<div class="outline-text-2" id="text-17">
<p>
We do output a RDF file with the pangenome built in, and you can parse it because it has variants implicitly.
@@ -524,8 +524,8 @@ We are also writing tools to generate VCF files directly from the pangenome.
</div>
</div>
-<div id="outline-container-org2fe4b9b" class="outline-2">
-<h2 id="org2fe4b9b"><span class="section-number-2">18</span> How do I deal with private data and privacy?</h2>
+<div id="outline-container-org66263d5" class="outline-2">
+<h2 id="org66263d5"><span class="section-number-2">18</span> How do I deal with private data and privacy?</h2>
<div class="outline-text-2" id="text-18">
<p>
A public sequence resource is about public data. Metadata can refer to
@@ -536,8 +536,8 @@ plan to combine identifiers with clinical data stored securely at
</div>
</div>
-<div id="outline-container-orgeb974e3" class="outline-2">
-<h2 id="orgeb974e3"><span class="section-number-2">19</span> Do you have any checks or concerns if human sequence accidentally submitted to your service as part of a fastq? *</h2>
+<div id="outline-container-org6cd833b" class="outline-2">
+<h2 id="org6cd833b"><span class="section-number-2">19</span> Do you have any checks or concerns if human sequence accidentally submitted to your service as part of a fastq? *</h2>
<div class="outline-text-2" id="text-19">
<p>
We are planning to remove reads that match the human reference.
@@ -545,8 +545,8 @@ We are planning to remove reads that match the human reference.
</div>
</div>
-<div id="outline-container-orgd6002f0" class="outline-2">
-<h2 id="orgd6002f0"><span class="section-number-2">20</span> Does PubSeq support only SARS-CoV-2 data? *</h2>
+<div id="outline-container-orge8f395f" class="outline-2">
+<h2 id="orge8f395f"><span class="section-number-2">20</span> Does PubSeq support only SARS-CoV-2 data? *</h2>
<div class="outline-text-2" id="text-20">
<p>
To date, PubSeq is a resource specific to SARS-CoV-2, but we are designing it to be able to support other species in the future.
@@ -555,17 +555,17 @@ To date, PubSeq is a resource specific to SARS-CoV-2, but we are designing it to
</div>
-<div id="outline-container-orgdfdd5c4" class="outline-2">
-<h2 id="orgdfdd5c4"><span class="section-number-2">21</span> How do I communicate with you?</h2>
+<div id="outline-container-org8f5ae93" class="outline-2">
+<h2 id="org8f5ae93"><span class="section-number-2">21</span> How do I communicate with you?</h2>
<div class="outline-text-2" id="text-21">
<p>
-We use a <a href="https://gitter.im/arvados/pubseq?utm_source=share-link&amp;utm_medium=link&amp;utm_campaign=share-link">gitter channel</a> you can join.
+We use a <a href="https://gitter.im/arvados/pubseq?utm_source=share-link&amp;utm_medium=link&amp;utm_campaign=share-link">gitter channel</a> you can join. See also <a href="./contact">contact</a>.
</p>
</div>
</div>
-<div id="outline-container-orgdde7304" class="outline-2">
-<h2 id="orgdde7304"><span class="section-number-2">22</span> Who are the sponsors?</h2>
+<div id="outline-container-org15ea9a8" class="outline-2">
+<h2 id="org15ea9a8"><span class="section-number-2">22</span> Who are the sponsors?</h2>
<div class="outline-text-2" id="text-22">
<p>
The main sponsors are listed in the footer. In addition to the time
@@ -576,7 +576,7 @@ for donating COVID-19 related compute time.
</div>
</div>
<div id="postamble" class="status">
-<hr><small>Created by <a href="http://thebird.nl/">Pjotr Prins</a> (pjotr.public768 at thebird 'dot' nl) using Emacs org-mode and a healthy dose of Lisp!<br />Modified 2020-08-22 Sat 03:48</small>.
+<hr><small>Created by <a href="http://thebird.nl/">Pjotr Prins</a> (pjotr.public768 at thebird 'dot' nl) using Emacs org-mode and a healthy dose of Lisp!<br />Modified 2020-08-22 Sat 04:42</small>.
</div>
</body>
</html>
diff --git a/doc/web/about.org b/doc/web/about.org
index 5f864e9..efd914f 100644
--- a/doc/web/about.org
+++ b/doc/web/about.org
@@ -204,7 +204,7 @@ To date, PubSeq is a resource specific to SARS-CoV-2, but we are designing it to
* How do I communicate with you?
-We use a [[https://gitter.im/arvados/pubseq?utm_source=share-link&utm_medium=link&utm_campaign=share-link][gitter channel]] you can join.
+We use a [[https://gitter.im/arvados/pubseq?utm_source=share-link&utm_medium=link&utm_campaign=share-link][gitter channel]] you can join. See also [[./contact][contact]].
* Who are the sponsors?
diff --git a/doc/web/contact.html b/doc/web/contact.html
new file mode 100644
index 0000000..8372743
--- /dev/null
+++ b/doc/web/contact.html
@@ -0,0 +1,286 @@
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+<head>
+<!-- 2020-08-22 Sat 05:03 -->
+<meta http-equiv="Content-Type" content="text/html;charset=utf-8" />
+<meta name="viewport" content="width=device-width, initial-scale=1" />
+<title>CONTACT</title>
+<meta name="generator" content="Org mode" />
+<meta name="author" content="Pjotr Prins" />
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+ dt { font-weight: bold; }
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+ .footdef { margin-bottom: 1em; }
+ .figure { padding: 1em; }
+ .figure p { text-align: center; }
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+</style>
+<script type="text/javascript">
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+JavaScript code in this tag.
+
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+
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+any later version. The code is distributed WITHOUT ANY WARRANTY;
+without even the implied warranty of MERCHANTABILITY or FITNESS
+FOR A PARTICULAR PURPOSE. See the GNU GPL for more details.
+
+As additional permission under GNU GPL version 3 section 7, you
+may distribute non-source (e.g., minimized or compacted) forms of
+that code without the copy of the GNU GPL normally required by
+section 4, provided you include this license notice and a URL
+through which recipients can access the Corresponding Source.
+
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+</head>
+<body>
+<div id="content">
+<h1 class="title">CONTACT</h1>
+<div id="table-of-contents">
+<h2>Table of Contents</h2>
+<div id="text-table-of-contents">
+<ul>
+<li><a href="#orgd0c1845">1. CONTACT and SUPPORT</a>
+<ul>
+<li><a href="#org5a8566b">1.1. Professional support</a></li>
+<li><a href="#orgccd5ecb">1.2. E-mail</a></li>
+</ul>
+</li>
+</ul>
+</div>
+</div>
+
+<div id="outline-container-orgd0c1845" class="outline-2">
+<h2 id="orgd0c1845"><span class="section-number-2">1</span> CONTACT and SUPPORT</h2>
+<div class="outline-text-2" id="text-1">
+<p>
+COVID-19 PubSeq was created by a group of <a href="https://github.com/arvados/bh20-seq-resource/graphs/contributors">bioinformaticians</a> and
+software developers working at leading institutes (see sponsors
+below). You can talk with us directly on a <a href="https://gitter.im/arvados/pubseq?utm_source=share-link&amp;utm_medium=link&amp;utm_campaign=share-link">gitter channel</a>. We are open
+to improving work flows and analysis.
+</p>
+</div>
+
+<div id="outline-container-org5a8566b" class="outline-3">
+<h3 id="org5a8566b"><span class="section-number-3">1.1</span> Professional support</h3>
+<div class="outline-text-3" id="text-1-1">
+<p>
+To use COVID-19 PubSeq solutions for professional purposes you can
+contact <a href="mailto:info@curii.com">Curii</a>, the creators of <a href="https://arvados.org/">Arvados</a>, directly.
+</p>
+
+<p>
+COVID-19 is built on Arvados using CWL workflows.
+</p>
+</div>
+</div>
+
+<div id="outline-container-orgccd5ecb" class="outline-3">
+<h3 id="orgccd5ecb"><span class="section-number-3">1.2</span> E-mail</h3>
+<div class="outline-text-3" id="text-1-2">
+<p>
+For other questions feel free to write directly to <a href="mailto:pjotr.public821@thebird.nl">Pjotr Prins</a>.
+</p>
+</div>
+</div>
+</div>
+</div>
+<div id="postamble" class="status">
+<hr><small>Created by <a href="http://thebird.nl/">Pjotr Prins</a> (pjotr.public768 at thebird 'dot' nl) using Emacs org-mode and a healthy dose of Lisp!<br />Modified 2020-08-22 Sat 05:03</small>.
+</div>
+</body>
+</html>
diff --git a/doc/web/contact.org b/doc/web/contact.org
new file mode 100644
index 0000000..f410cee
--- /dev/null
+++ b/doc/web/contact.org
@@ -0,0 +1,20 @@
+#+TITLE: CONTACT
+#+AUTHOR: Pjotr Prins
+
+* CONTACT and SUPPORT
+
+COVID-19 PubSeq was created by a group of [[https://github.com/arvados/bh20-seq-resource/graphs/contributors][bioinformaticians]] and
+software developers working at leading institutes (see sponsors
+below). You can talk with us directly on a [[https://gitter.im/arvados/pubseq?utm_source=share-link&utm_medium=link&utm_campaign=share-link][gitter channel]]. We are open
+to improving work flows and analysis.
+
+** Professional support
+
+To use COVID-19 PubSeq solutions for professional purposes you can
+contact [[mailto:info@curii.com][Curii]], the creators of [[https://arvados.org/][Arvados]], directly.
+
+COVID-19 is built on Arvados using CWL workflows.
+
+** E-mail
+
+For other questions feel free to write directly to [[mailto:pjotr.public821@thebird.nl][Pjotr Prins]].