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| author | AndreaGuarracino | 2021-01-05 14:18:26 +0100 |
|---|---|---|
| committer | AndreaGuarracino | 2021-01-05 14:18:26 +0100 |
| commit | e9f73388c810c678a69ce23c925d7914ba99a251 (patch) | |
| tree | 04731e150e44a2d102f49b431527b73fb1caad2f /workflows/yamlfa2ttl/check_format.cwl | |
| parent | 491b39273b54ca89861febf5c27d28f032ba1c49 (diff) | |
| download | bh20-seq-resource-e9f73388c810c678a69ce23c925d7914ba99a251.tar.gz bh20-seq-resource-e9f73388c810c678a69ce23c925d7914ba99a251.tar.lz bh20-seq-resource-e9f73388c810c678a69ce23c925d7914ba99a251.zip | |
added check_format workflow and script
Diffstat (limited to 'workflows/yamlfa2ttl/check_format.cwl')
| -rw-r--r-- | workflows/yamlfa2ttl/check_format.cwl | 22 |
1 files changed, 22 insertions, 0 deletions
diff --git a/workflows/yamlfa2ttl/check_format.cwl b/workflows/yamlfa2ttl/check_format.cwl new file mode 100644 index 0000000..24de620 --- /dev/null +++ b/workflows/yamlfa2ttl/check_format.cwl @@ -0,0 +1,22 @@ +#!/usr/bin/env cwl-runner + +cwlVersion: v1.1 +class: CommandLineTool +baseCommand: python3 +inputs: + script: + type: File + inputBinding: {position: 1} + default: {class: File, location: check_format.py} + path_fasta: + type: string + inputBinding: {position: 2} + format_to_check: + type: string + inputBinding: {position: 3} + path_valid_formats: + type: File + inputBinding: {position: 4} + default: {class: File, location: ../../bh20sequploader/validation/formats} +outputs: [] + |