From e9f73388c810c678a69ce23c925d7914ba99a251 Mon Sep 17 00:00:00 2001
From: AndreaGuarracino
Date: Tue, 5 Jan 2021 14:18:26 +0100
Subject: added check_format workflow and script

---
 workflows/yamlfa2ttl/check_format.cwl | 22 ++++++++++++++++++++++
 1 file changed, 22 insertions(+)
 create mode 100644 workflows/yamlfa2ttl/check_format.cwl

(limited to 'workflows/yamlfa2ttl/check_format.cwl')

diff --git a/workflows/yamlfa2ttl/check_format.cwl b/workflows/yamlfa2ttl/check_format.cwl
new file mode 100644
index 0000000..24de620
--- /dev/null
+++ b/workflows/yamlfa2ttl/check_format.cwl
@@ -0,0 +1,22 @@
+#!/usr/bin/env cwl-runner
+
+cwlVersion: v1.1
+class: CommandLineTool
+baseCommand: python3
+inputs:
+  script:
+    type: File
+    inputBinding: {position: 1}
+    default: {class: File, location: check_format.py}
+  path_fasta:
+    type: string
+    inputBinding: {position: 2}
+  format_to_check:
+    type: string
+    inputBinding: {position: 3}
+  path_valid_formats:
+    type: File
+    inputBinding: {position: 4}
+    default: {class: File, location: ../../bh20sequploader/validation/formats}
+outputs: []
+
-- 
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