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author | Pjotr Prins | 2021-01-03 08:05:51 +0000 |
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committer | Pjotr Prins | 2021-01-03 08:05:51 +0000 |
commit | a5ba1a8062e7116c2951762f86a6ae6d1638261d (patch) | |
tree | 6315a062ff00e72e791e68d1fb7fd75ea47a9560 /workflows/pull-data/genbank/ref.py | |
parent | d55a1b6556e6cd6e09405cb1f4bcf58d52892331 (diff) | |
download | bh20-seq-resource-a5ba1a8062e7116c2951762f86a6ae6d1638261d.tar.gz bh20-seq-resource-a5ba1a8062e7116c2951762f86a6ae6d1638261d.tar.lz bh20-seq-resource-a5ba1a8062e7116c2951762f86a6ae6d1638261d.zip |
genbank: submitter info
Diffstat (limited to 'workflows/pull-data/genbank/ref.py')
-rw-r--r-- | workflows/pull-data/genbank/ref.py | 11 |
1 files changed, 0 insertions, 11 deletions
diff --git a/workflows/pull-data/genbank/ref.py b/workflows/pull-data/genbank/ref.py index e998d37..66c9fb0 100644 --- a/workflows/pull-data/genbank/ref.py +++ b/workflows/pull-data/genbank/ref.py @@ -1,16 +1,5 @@ # ---- BELOW IS JUST FOR REFERENCE ---- - GBReference = GBSeq_references.find('GBReference') - if GBReference is not None: - GBReference_journal = GBReference.find('GBReference_journal') - - if GBReference_journal is not None and GBReference_journal.text != 'Unpublished': - if 'Submitted' in GBReference_journal.text: - submitter['submitter_name'] = ["{}".format(GBReference_journal.text.split(') ')[1].split(',')[0].strip())] - submitter['submitter_address'] = ','.join(GBReference_journal.text.split(') ')[1].split(',')[1:]).strip() - else: - submitter['additional_submitter_information'] = GBReference_journal.text - # This script download and prepare data and metadata for assemblies samples technology['assembly_method'] = 'http://purl.obolibrary.org/obo/GENEPIO_0001628' |