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| author | Pjotr Prins | 2021-01-01 09:53:15 +0000 |
|---|---|---|
| committer | Pjotr Prins | 2021-01-01 09:53:15 +0000 |
| commit | acdd66f36e1596f8337195f22fdd7dd8a85c2b70 (patch) | |
| tree | 889464ae7af6505ff4717d82be178e0df2fa9638 /workflows/pull-data/genbank/genbank-fetch-ids | |
| parent | fc28fdbbb5e121eb94bb06334a30e9b5395e003b (diff) | |
| download | bh20-seq-resource-acdd66f36e1596f8337195f22fdd7dd8a85c2b70.tar.gz bh20-seq-resource-acdd66f36e1596f8337195f22fdd7dd8a85c2b70.tar.lz bh20-seq-resource-acdd66f36e1596f8337195f22fdd7dd8a85c2b70.zip | |
genbank-fetch-ids simple call
Diffstat (limited to 'workflows/pull-data/genbank/genbank-fetch-ids')
| -rwxr-xr-x | workflows/pull-data/genbank/genbank-fetch-ids | 6 |
1 files changed, 4 insertions, 2 deletions
diff --git a/workflows/pull-data/genbank/genbank-fetch-ids b/workflows/pull-data/genbank/genbank-fetch-ids index 00f693f..24fe4c7 100755 --- a/workflows/pull-data/genbank/genbank-fetch-ids +++ b/workflows/pull-data/genbank/genbank-fetch-ids @@ -1,3 +1,5 @@ -#!/usr/bin/env ruby -# +#!/bin/sh # +# genbank-fetch-ids > genbank_ids.tx + +curl 'https://www.ncbi.nlm.nih.gov/genomes/VirusVariation/vvsearch2/?q=*:*&fq=%7B!tag=SeqType_s%7DSeqType_s:(%22Nucleotide%22)&fq=VirusLineageId_ss:(2697049)&cmd=download&sort=SourceDB_s%20desc,CreateDate_dt%20desc,id%20asc&dlfmt=acc&fl=id' |