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BranchCommit messageAuthorAge
analysis-refactorAdd "validated" and "running workflows" tables to statusPeter Amstutz4 years
fasta-subset-from-queryExtract PDH from result and construct URIs from thatPeter Amstutz3 years
generate-cwlUse default output of pipelineArun Isaac3 years
masterJetson test sequencePjotr Prins3 years
new_assembly_method_fieldadded the assembly_method field to distinguish de-novo assemblies from refere...AndreaGuarracino4 years
pangenome_workflow_abpoaabPOA works better starting from shorter sequencesAndreaGuarracino3 years
upload-download-statusGive uploader an option to trust local validation (for batch imports)Peter Amstutz4 years
uuid-for-resourceUse arvados uuids for RDF subjects.Peter Amstutz3 years
yamlfa2ttlsample_id in the FASTA has to match the sample_id in the YAMLAndreaGuarracino3 years
 
 
AgeCommit messageAuthor
2021-03-17Use default output of pipelinegenerate-cwlArun Isaac
2021-03-17Do not specify outputs to be of File type.Arun Isaac
2021-03-17Do not specify inputs to be of File type.Arun Isaac
2021-03-07Rewrite fastq2fasta.scm using new ccwl APIArun Isaac
2021-03-07Implement bowtie, bwa-mem variant calling in ccwlArun Isaac
2021-02-25Rewrite fastq2fasta workflow using clitool-stepArun Isaac
2021-02-25Move generate-cwl to its own repositoryArun Isaac
2021-02-21Implement fastq2fasta workflows in schemeArun Isaac
2021-02-21Add CWL generator for Workflow workflowsArun Isaac
2021-02-21Add CWL generator for CommandLineTool workflowsArun Isaac
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