From acdd66f36e1596f8337195f22fdd7dd8a85c2b70 Mon Sep 17 00:00:00 2001 From: Pjotr Prins Date: Fri, 1 Jan 2021 09:53:15 +0000 Subject: genbank-fetch-ids simple call --- workflows/pull-data/genbank/genbank-fetch-ids | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) (limited to 'workflows/pull-data/genbank/genbank-fetch-ids') diff --git a/workflows/pull-data/genbank/genbank-fetch-ids b/workflows/pull-data/genbank/genbank-fetch-ids index 00f693f..24fe4c7 100755 --- a/workflows/pull-data/genbank/genbank-fetch-ids +++ b/workflows/pull-data/genbank/genbank-fetch-ids @@ -1,3 +1,5 @@ -#!/usr/bin/env ruby -# +#!/bin/sh # +# genbank-fetch-ids > genbank_ids.tx + +curl 'https://www.ncbi.nlm.nih.gov/genomes/VirusVariation/vvsearch2/?q=*:*&fq=%7B!tag=SeqType_s%7DSeqType_s:(%22Nucleotide%22)&fq=VirusLineageId_ss:(2697049)&cmd=download&sort=SourceDB_s%20desc,CreateDate_dt%20desc,id%20asc&dlfmt=acc&fl=id' -- cgit v1.2.3