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authorPjotr Prins2021-01-26 16:22:19 +0000
committerGitHub2021-01-26 16:22:19 +0000
commita54122023ef2bde4ef4fc39355b3491678bbf773 (patch)
tree150bef4a574486db9e7c16d87be89ad219d84bb1 /workflows/phylogeny/metadata.cwl
parentb112b3203e34ea61dfdf802bce5036f938eaa774 (diff)
parent4842117f530aba08b4a253aee533a8d4802b1c12 (diff)
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Merge pull request #124 from urbanslug/master
Add phylogeny workflow
Diffstat (limited to 'workflows/phylogeny/metadata.cwl')
-rw-r--r--workflows/phylogeny/metadata.cwl33
1 files changed, 33 insertions, 0 deletions
diff --git a/workflows/phylogeny/metadata.cwl b/workflows/phylogeny/metadata.cwl
new file mode 100644
index 0000000..4ce6e17
--- /dev/null
+++ b/workflows/phylogeny/metadata.cwl
@@ -0,0 +1,33 @@
+#!/usr/bin/env cwl-runner
+
+cwlVersion: v1.1
+
+class: CommandLineTool
+baseCommand: python
+
+inputs:
+ main_py_script:
+ type: File
+ inputBinding:
+ position: 1
+
+ metadata:
+ type: string
+ inputBinding:
+ position: 2
+
+ coverage_matrix:
+ type: File
+ inputBinding:
+ position: 3
+
+ coverage_matrix_with_metadata:
+ type: string
+ inputBinding:
+ position: 4
+
+outputs:
+ coverage_matrix_with_metadata_out:
+ type: File
+ outputBinding:
+ glob: '*.metadata.tsv' \ No newline at end of file