From 4842117f530aba08b4a253aee533a8d4802b1c12 Mon Sep 17 00:00:00 2001
From: Njagi Mwaniki
Date: Tue, 26 Jan 2021 13:44:01 +0300
Subject: Add phylogeny workflow

Signed-off-by: Njagi Mwaniki <njagi@urbanslug.com>
---
 workflows/phylogeny/metadata.cwl | 33 +++++++++++++++++++++++++++++++++
 1 file changed, 33 insertions(+)
 create mode 100644 workflows/phylogeny/metadata.cwl

(limited to 'workflows/phylogeny/metadata.cwl')

diff --git a/workflows/phylogeny/metadata.cwl b/workflows/phylogeny/metadata.cwl
new file mode 100644
index 0000000..4ce6e17
--- /dev/null
+++ b/workflows/phylogeny/metadata.cwl
@@ -0,0 +1,33 @@
+#!/usr/bin/env cwl-runner
+
+cwlVersion: v1.1
+
+class: CommandLineTool
+baseCommand: python
+
+inputs:
+    main_py_script:
+        type: File
+        inputBinding:
+            position: 1
+
+    metadata:
+        type: string
+        inputBinding:
+            position: 2
+
+    coverage_matrix:
+        type: File
+        inputBinding:
+            position: 3
+
+    coverage_matrix_with_metadata:
+        type: string
+        inputBinding:
+            position: 4
+
+outputs:
+    coverage_matrix_with_metadata_out:
+        type: File
+        outputBinding:
+            glob: '*.metadata.tsv'
\ No newline at end of file
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