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authorPjotr Prins2020-05-12 13:55:55 -0500
committerPjotr Prins2020-05-12 13:55:55 -0500
commit8e9042879db7fe061f3d18737f4102b5fd0b8c65 (patch)
tree978645b86e805c218451beaf194bfd97f2fbd9d8 /workflows/pangenome-generate/odgi-viz.cwl
parent40ca03045bbc4f6fb1258acb6f42a60ee5532e0d (diff)
parent55bab826fda6c6bc3190476f8e2c61e51ef092d6 (diff)
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Merge branch 'master' of github.com:arvados/bh20-seq-resource
Diffstat (limited to 'workflows/pangenome-generate/odgi-viz.cwl')
-rw-r--r--workflows/pangenome-generate/odgi-viz.cwl25
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diff --git a/workflows/pangenome-generate/odgi-viz.cwl b/workflows/pangenome-generate/odgi-viz.cwl
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--- a/workflows/pangenome-generate/odgi-viz.cwl
+++ /dev/null
@@ -1,25 +0,0 @@
-cwlVersion: v1.1
-class: CommandLineTool
-inputs:
- inputODGI: File
-outputs:
- odgiPNG:
- type: File
- outputBinding:
- glob: $(inputs.inputODGI.nameroot).png
-requirements:
- InlineJavascriptRequirement: {}
-hints:
- DockerRequirement:
- dockerPull: "quay.io/biocontainers/odgi:v0.3--py37h8b12597_0"
- ResourceRequirement:
- coresMin: 4
- ramMin: $(7 * 1024)
- outdirMin: 1
-baseCommand: [odgi, viz]
-arguments: [-i, $(inputs.inputODGI),
- -o, $(inputs.inputODGI.nameroot).png,
- -x, "50000",
- -y, "500",
- -R,
- -P, "4"]