From 6599feb6a6f8b488bd2d12fcf532c3b8a917a17f Mon Sep 17 00:00:00 2001
From: Michael R. Crusoe
Date: Tue, 5 May 2020 13:11:02 +0200
Subject: move some tools into the shared repo

---
 workflows/pangenome-generate/odgi-viz.cwl | 25 -------------------------
 1 file changed, 25 deletions(-)
 delete mode 100644 workflows/pangenome-generate/odgi-viz.cwl

(limited to 'workflows/pangenome-generate/odgi-viz.cwl')

diff --git a/workflows/pangenome-generate/odgi-viz.cwl b/workflows/pangenome-generate/odgi-viz.cwl
deleted file mode 100644
index d440fcb..0000000
--- a/workflows/pangenome-generate/odgi-viz.cwl
+++ /dev/null
@@ -1,25 +0,0 @@
-cwlVersion: v1.1
-class: CommandLineTool
-inputs:
-  inputODGI: File
-outputs:
-  odgiPNG:
-    type: File
-    outputBinding:
-      glob: $(inputs.inputODGI.nameroot).png
-requirements:
-  InlineJavascriptRequirement: {}
-hints:
-  DockerRequirement:
-    dockerPull: "quay.io/biocontainers/odgi:v0.3--py37h8b12597_0"
-  ResourceRequirement:
-    coresMin: 4
-    ramMin: $(7 * 1024)
-    outdirMin: 1
-baseCommand: [odgi, viz]
-arguments: [-i, $(inputs.inputODGI),
-            -o, $(inputs.inputODGI.nameroot).png,
-            -x, "50000",
-            -y, "500",
-            -R,
-            -P, "4"]
-- 
cgit v1.2.3