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| author | Peter Amstutz | 2020-08-19 15:15:57 -0400 |
|---|---|---|
| committer | Peter Amstutz | 2020-08-19 16:31:38 -0400 |
| commit | d1e8809a15ae74d0b847abb80f9f63f53078e1d6 (patch) | |
| tree | 77a62801b9e8928889d85dadccf1ffce85b2e0cb /workflows/pangenome-generate/arv-main.cwl | |
| parent | b3d2ccf951903ac0b7d717357fb1cccca26fbd15 (diff) | |
| download | bh20-seq-resource-d1e8809a15ae74d0b847abb80f9f63f53078e1d6.tar.gz bh20-seq-resource-d1e8809a15ae74d0b847abb80f9f63f53078e1d6.tar.lz bh20-seq-resource-d1e8809a15ae74d0b847abb80f9f63f53078e1d6.zip | |
Scaling pangenome generation
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Diffstat (limited to 'workflows/pangenome-generate/arv-main.cwl')
| -rw-r--r-- | workflows/pangenome-generate/arv-main.cwl | 20 |
1 files changed, 10 insertions, 10 deletions
diff --git a/workflows/pangenome-generate/arv-main.cwl b/workflows/pangenome-generate/arv-main.cwl index 176cfe7..8d7f83b 100644 --- a/workflows/pangenome-generate/arv-main.cwl +++ b/workflows/pangenome-generate/arv-main.cwl @@ -10,9 +10,9 @@ outputs: odgiGraph: type: File outputSource: pangenome-generate/odgiGraph - odgiPNG: - type: File - outputSource: pangenome-generate/odgiPNG +# odgiPNG: +# type: File +# outputSource: pangenome-generate/odgiPNG spoaGFA: type: File outputSource: pangenome-generate/spoaGFA @@ -25,12 +25,12 @@ outputs: mergedMetadata: type: File outputSource: pangenome-generate/mergedMetadata - indexed_paths: - type: File - outputSource: pangenome-generate/indexed_paths - colinear_components: - type: Directory - outputSource: pangenome-generate/colinear_components +# indexed_paths: +# type: File +# outputSource: pangenome-generate/indexed_paths +# colinear_components: +# type: Directory +# outputSource: pangenome-generate/colinear_components steps: collect-seqs: run: collect-seqs.cwl @@ -45,4 +45,4 @@ steps: seqs: collect-seqs/relabeledSeqs metadata: collect-seqs/mergedMetadata exclude: exclude - out: [odgiGraph, odgiPNG, spoaGFA, odgiRDF, readsMergeDedup, mergedMetadata, indexed_paths, colinear_components] + out: [odgiGraph, spoaGFA, odgiRDF, readsMergeDedup, mergedMetadata] |