From d1e8809a15ae74d0b847abb80f9f63f53078e1d6 Mon Sep 17 00:00:00 2001
From: Peter Amstutz
Date: Wed, 19 Aug 2020 15:15:57 -0400
Subject: Scaling pangenome generation

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
---
 workflows/pangenome-generate/arv-main.cwl | 20 ++++++++++----------
 1 file changed, 10 insertions(+), 10 deletions(-)

(limited to 'workflows/pangenome-generate/arv-main.cwl')

diff --git a/workflows/pangenome-generate/arv-main.cwl b/workflows/pangenome-generate/arv-main.cwl
index 176cfe7..8d7f83b 100644
--- a/workflows/pangenome-generate/arv-main.cwl
+++ b/workflows/pangenome-generate/arv-main.cwl
@@ -10,9 +10,9 @@ outputs:
   odgiGraph:
     type: File
     outputSource: pangenome-generate/odgiGraph
-  odgiPNG:
-    type: File
-    outputSource: pangenome-generate/odgiPNG
+#  odgiPNG:
+#    type: File
+#    outputSource: pangenome-generate/odgiPNG
   spoaGFA:
     type: File
     outputSource: pangenome-generate/spoaGFA
@@ -25,12 +25,12 @@ outputs:
   mergedMetadata:
     type: File
     outputSource: pangenome-generate/mergedMetadata
-  indexed_paths:
-    type: File
-    outputSource: pangenome-generate/indexed_paths
-  colinear_components:
-    type: Directory
-    outputSource: pangenome-generate/colinear_components
+#  indexed_paths:
+#    type: File
+#    outputSource: pangenome-generate/indexed_paths
+#  colinear_components:
+#    type: Directory
+#    outputSource: pangenome-generate/colinear_components
 steps:
   collect-seqs:
     run: collect-seqs.cwl
@@ -45,4 +45,4 @@ steps:
       seqs: collect-seqs/relabeledSeqs
       metadata: collect-seqs/mergedMetadata
       exclude: exclude
-    out: [odgiGraph, odgiPNG, spoaGFA, odgiRDF, readsMergeDedup, mergedMetadata, indexed_paths, colinear_components]
+    out: [odgiGraph, spoaGFA, odgiRDF, readsMergeDedup, mergedMetadata]
-- 
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