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| author | lltommy | 2020-04-28 20:31:42 +0200 |
|---|---|---|
| committer | lltommy | 2020-04-28 20:31:42 +0200 |
| commit | 6032a373003affa641ca1e70a44c29a232b5b3ed (patch) | |
| tree | 3621db63632ec830c64e6ee687691a33932ddeb3 /scripts | |
| parent | 5da793a8715f5b0b231ea4d531f030ed04bc878c (diff) | |
| download | bh20-seq-resource-6032a373003affa641ca1e70a44c29a232b5b3ed.tar.gz bh20-seq-resource-6032a373003affa641ca1e70a44c29a232b5b3ed.tar.lz bh20-seq-resource-6032a373003affa641ca1e70a44c29a232b5b3ed.zip | |
Changes to the structure - we use lists now instead of strings where it makes sense. This allows us to have multiple values where in makes sense
Diffstat (limited to 'scripts')
| -rwxr-xr-x | scripts/from_genbank_to_fasta_and_yaml.py | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/scripts/from_genbank_to_fasta_and_yaml.py b/scripts/from_genbank_to_fasta_and_yaml.py index 5257bd1..148a7e1 100755 --- a/scripts/from_genbank_to_fasta_and_yaml.py +++ b/scripts/from_genbank_to_fasta_and_yaml.py @@ -112,7 +112,7 @@ for path_metadata_xxx_xml in [os.path.join(dir_metadata, name_metadata_xxx_xml) info_for_yaml_dict['sample']['sample_id'] = accession_version - info_for_yaml_dict['sample']['source_database_accession'] = accession_version + info_for_yaml_dict['sample']['source_database_accession'] = "http://identifiers.org/insdc/"+accession_version+"#sequence" #accession is turned into resolvable URL/URI now # submitter info |