From 6032a373003affa641ca1e70a44c29a232b5b3ed Mon Sep 17 00:00:00 2001 From: lltommy Date: Tue, 28 Apr 2020 20:31:42 +0200 Subject: Changes to the structure - we use lists now instead of strings where it makes sense. This allows us to have multiple values where in makes sense --- scripts/from_genbank_to_fasta_and_yaml.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) (limited to 'scripts') diff --git a/scripts/from_genbank_to_fasta_and_yaml.py b/scripts/from_genbank_to_fasta_and_yaml.py index 5257bd1..148a7e1 100755 --- a/scripts/from_genbank_to_fasta_and_yaml.py +++ b/scripts/from_genbank_to_fasta_and_yaml.py @@ -112,7 +112,7 @@ for path_metadata_xxx_xml in [os.path.join(dir_metadata, name_metadata_xxx_xml) info_for_yaml_dict['sample']['sample_id'] = accession_version - info_for_yaml_dict['sample']['source_database_accession'] = accession_version + info_for_yaml_dict['sample']['source_database_accession'] = "http://identifiers.org/insdc/"+accession_version+"#sequence" #accession is turned into resolvable URL/URI now # submitter info -- cgit v1.2.3