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authorAndrea Guarracino2020-06-22 23:38:22 +0200
committerGitHub2020-06-22 23:38:22 +0200
commit2d822c049f2b7f3e62a3ac4c19c827428b6f73e2 (patch)
tree847268e1194586a628836d03f897a54722e9b1da /scripts
parent640675e07505dc0f7969480fe0643653e6408ec2 (diff)
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very little readme for the scripts
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+### Instructions for download and/or prepare the data and/ or the metadata
+
+Just go into the `download_genbank_data` or `download_sra_data` directory and execute the python3 script inside.
+
+- `download_genbank_data/from_genbank_to_fasta_and_yaml.py` downloads the data and the matadata, preparing the FASTA and the YAML files;
+- `download_sra_data/download_sra_data.py` creates the metadata in the form of YAML files from the SraExperimentPackage.XXX.xml.gz file in the same directory.