From 2d822c049f2b7f3e62a3ac4c19c827428b6f73e2 Mon Sep 17 00:00:00 2001 From: Andrea Guarracino Date: Mon, 22 Jun 2020 23:38:22 +0200 Subject: very little readme for the scripts --- scripts/README.md | 6 ++++++ 1 file changed, 6 insertions(+) create mode 100644 scripts/README.md (limited to 'scripts') diff --git a/scripts/README.md b/scripts/README.md new file mode 100644 index 0000000..a3ed1b6 --- /dev/null +++ b/scripts/README.md @@ -0,0 +1,6 @@ +### Instructions for download and/or prepare the data and/ or the metadata + +Just go into the `download_genbank_data` or `download_sra_data` directory and execute the python3 script inside. + +- `download_genbank_data/from_genbank_to_fasta_and_yaml.py` downloads the data and the matadata, preparing the FASTA and the YAML files; +- `download_sra_data/download_sra_data.py` creates the metadata in the form of YAML files from the SraExperimentPackage.XXX.xml.gz file in the same directory. -- cgit v1.2.3