diff options
| author | Peter Amstutz | 2020-04-30 10:22:27 -0400 |
|---|---|---|
| committer | Peter Amstutz | 2020-04-30 10:22:27 -0400 |
| commit | 347b8dce36832c6d3e379d81b3efefcbc88a3117 (patch) | |
| tree | 1d0f62247576dfd746511aed683acd65072b1783 /scripts/import.cwl | |
| parent | 3475c3e30197a11ada10d1b0a4bafb026f2fb580 (diff) | |
| download | bh20-seq-resource-347b8dce36832c6d3e379d81b3efefcbc88a3117.tar.gz bh20-seq-resource-347b8dce36832c6d3e379d81b3efefcbc88a3117.tar.lz bh20-seq-resource-347b8dce36832c6d3e379d81b3efefcbc88a3117.zip | |
Wrap import script to run as a workflow
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Diffstat (limited to 'scripts/import.cwl')
| -rw-r--r-- | scripts/import.cwl | 24 |
1 files changed, 24 insertions, 0 deletions
diff --git a/scripts/import.cwl b/scripts/import.cwl new file mode 100644 index 0000000..81752c8 --- /dev/null +++ b/scripts/import.cwl @@ -0,0 +1,24 @@ +cwlVersion: v1.1 +class: CommandLineTool +baseCommand: python3 +inputs: + scripts: + type: File + default: + class: File + location: import_to_arvados.py + inputBinding: {position: 1} + importScript: + type: File + default: + class: File + location: from_genbank_to_fasta_and_yaml.py + inputBinding: {position: 2} +outputs: [] +requirements: + DockerRequirement: + dockerPull: bh20-seq-uploader/import + NetworkAccess: + networkAccess: true + WorkReuse: + workReuse: false |