From 347b8dce36832c6d3e379d81b3efefcbc88a3117 Mon Sep 17 00:00:00 2001
From: Peter Amstutz
Date: Thu, 30 Apr 2020 10:22:27 -0400
Subject: Wrap import script to run as a workflow

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
---
 scripts/import.cwl | 24 ++++++++++++++++++++++++
 1 file changed, 24 insertions(+)
 create mode 100644 scripts/import.cwl

(limited to 'scripts/import.cwl')

diff --git a/scripts/import.cwl b/scripts/import.cwl
new file mode 100644
index 0000000..81752c8
--- /dev/null
+++ b/scripts/import.cwl
@@ -0,0 +1,24 @@
+cwlVersion: v1.1
+class: CommandLineTool
+baseCommand: python3
+inputs:
+  scripts:
+    type: File
+    default:
+      class: File
+      location: import_to_arvados.py
+    inputBinding: {position: 1}
+  importScript:
+    type: File
+    default:
+      class: File
+      location: from_genbank_to_fasta_and_yaml.py
+    inputBinding: {position: 2}
+outputs: []
+requirements:
+  DockerRequirement:
+    dockerPull: bh20-seq-uploader/import
+  NetworkAccess:
+    networkAccess: true
+  WorkReuse:
+    workReuse: false
-- 
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