From 87440554e57d5c5ed846e98a3b3ec428330e15e8 Mon Sep 17 00:00:00 2001 From: AndreaGuarracino Date: Thu, 12 Nov 2020 18:35:00 +0100 Subject: updated alignment_protocol field in the script, doc, and the example templates --- example/esr_example.yaml | 2 +- example/maximum_metadata_example.yaml | 2 +- example/uthsc_example.yaml | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) (limited to 'example') diff --git a/example/esr_example.yaml b/example/esr_example.yaml index 48b11e4..b3e97d5 100644 --- a/example/esr_example.yaml +++ b/example/esr_example.yaml @@ -24,7 +24,7 @@ virus: technology: sample_sequencing_technology: [http://www.ebi.ac.uk/efo/EFO_0008632] // Nanopore MinION - sequence_assembly_method: https://github.com/ESR-NZ/NZ_SARS-CoV-2_genomics + alignment_protocol: https://github.com/ESR-NZ/NZ_SARS-CoV-2_genomics additional_technology_information: "Artic V3 workflow" submitter: diff --git a/example/maximum_metadata_example.yaml b/example/maximum_metadata_example.yaml index 54736f8..cd8890d 100644 --- a/example/maximum_metadata_example.yaml +++ b/example/maximum_metadata_example.yaml @@ -35,7 +35,7 @@ virus: technology: sample_sequencing_technology: [http://www.ebi.ac.uk/efo/EFO_0009173,http://www.ebi.ac.uk/efo/EFO_0009173] - sequence_assembly_method: Protocol used for assembly + alignment_protocol: Protocol used for assembly sequencing_coverage: [70.0, 100.0] additional_technology_information: Optional free text field for additional information diff --git a/example/uthsc_example.yaml b/example/uthsc_example.yaml index 956faf1..3bdbf6f 100644 --- a/example/uthsc_example.yaml +++ b/example/uthsc_example.yaml @@ -24,7 +24,7 @@ virus: technology: sample_sequencing_technology: [http://www.ebi.ac.uk/efo/EFO_0008632] // Nanopore MinION - sequence_assembly_method: guppy + alignment_protocol: guppy additional_technology_information: Optional free text field for additional information submitter: -- cgit v1.2.3