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authorlltommy2020-04-09 14:34:54 +0200
committerlltommy2020-04-09 14:34:54 +0200
commitd7498093d0f5e0db052ef88815d57c2648d09425 (patch)
tree7fcea4dd7986a34296917d3091e90e7c4ce8a98e /example/metadata.yaml
parent9458ed33da08c787c4bb20af7b4108c93334b351 (diff)
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Updating schema and examples. This is still work in progress but we get there
Diffstat (limited to 'example/metadata.yaml')
-rw-r--r--example/metadata.yaml49
1 files changed, 35 insertions, 14 deletions
diff --git a/example/metadata.yaml b/example/metadata.yaml
index 587d0be..8a93379 100644
--- a/example/metadata.yaml
+++ b/example/metadata.yaml
@@ -1,17 +1,38 @@
-sampleInformation:
- location: "USA"
- host : "Homo Sapiens"
- sequenceTechnology: "Sanger"
- assemblyMethod: "CLC Genomics"
+host:
+ host_id: XX1
+ host_species: string
+ host_common_name: string
+ host_sex: string
+ host_age: 20
+ host_age_unit: string
+ host_health_status: string
+ host_treatment: string
+ additional_host_information: string
-InstituteInformation:
- OriginatingLab: "Erik's kitchen"
- SubmittingLab: "National Institute for Viral Disease Control and Prevention, China CDC"
+sample:
+ collector_name: XXX
+ collecting_institution: XXX
+ specimen_source: XXX
+ collection_date: XXX
+ collection_location: XXX
+ sample_storage_conditions: XXX
+ additional_collection_information: XXX
-SubmitterInformation:
- Submitter: "National Institute for Viral Disease Control and Prevention, China CDC"
- submissionDate: "04-04-2020"
+virus:
+ virus_species: XX
+ virus_strain: XX
-VirusDetail:
- VirusName: "hCoV-19/USA/identifer/2020"
- AccessionId: "EPI_ISL_Random"
+technology:
+ sample_sequencing_technology: XX
+ sequence_assembly_method: XX
+ sequencing_coverage: 70x
+
+submitter:
+ submitter_name: tester
+ submitter_address: testerAdd
+ originating_lab: testLab
+ lab_address: labAdd
+ provider_sample_id: string
+ submitter_sample_id: string
+ authors: testAuthor
+ submitter_id: X12 \ No newline at end of file