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authorAndreaGuarracino2020-11-12 18:35:00 +0100
committerAndreaGuarracino2020-11-12 18:35:00 +0100
commit87440554e57d5c5ed846e98a3b3ec428330e15e8 (patch)
treef5c02264faac820a91cbe92974f279f5bec10c48 /doc
parent0bfe144ca40b4dfc1d75e195f3cfae7a8af94dc0 (diff)
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updated alignment_protocol field in the script, doc, and the example templates
Diffstat (limited to 'doc')
-rw-r--r--doc/blog/using-covid-19-pubseq-part3.html2
-rw-r--r--doc/blog/using-covid-19-pubseq-part3.org2
2 files changed, 2 insertions, 2 deletions
diff --git a/doc/blog/using-covid-19-pubseq-part3.html b/doc/blog/using-covid-19-pubseq-part3.html
index b49830b..aea74ad 100644
--- a/doc/blog/using-covid-19-pubseq-part3.html
+++ b/doc/blog/using-covid-19-pubseq-part3.html
@@ -589,7 +589,7 @@ virus:
technology:
sample_sequencing_technology: [http://www.ebi.ac.uk/efo/EFO_<span style="color: #8bc34a;">0009173</span>,http://www.ebi.ac.uk/efo/EFO_<span style="color: #8bc34a;">0009173</span>]
- sequence_assembly_method: Protocol used for assembly
+ alignment_protocol: Protocol used for assembly
sequencing_coverage: [<span style="color: #8bc34a;">70.0</span>, <span style="color: #8bc34a;">100.0</span>]
additional_technology_information: Optional free text field for additional information
diff --git a/doc/blog/using-covid-19-pubseq-part3.org b/doc/blog/using-covid-19-pubseq-part3.org
index d0d6c7f..c98bf27 100644
--- a/doc/blog/using-covid-19-pubseq-part3.org
+++ b/doc/blog/using-covid-19-pubseq-part3.org
@@ -234,7 +234,7 @@ a more elaborate example (note most fields are optional) may look like
technology:
sample_sequencing_technology: [http://www.ebi.ac.uk/efo/EFO_0009173,http://www.ebi.ac.uk/efo/EFO_0009173]
- sequence_assembly_method: Protocol used for assembly
+ alignment_protocol: Protocol used for assembly
sequencing_coverage: [70.0, 100.0]
additional_technology_information: Optional free text field for additional information