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authorPjotr Prins2020-08-22 14:07:53 +0100
committerPjotr Prins2020-08-22 14:07:53 +0100
commit246c516e4a8c98394c695dcb446995319d557e01 (patch)
tree08c81638a12fdb94e36285267e77755a2c25cdd7 /doc/blog/using-covid-19-pubseq-part5.org
parentf776816ee2b1af7ccc84afb494f68a81a51f5a76 (diff)
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1 files changed, 5 insertions, 1 deletions
diff --git a/doc/blog/using-covid-19-pubseq-part5.org b/doc/blog/using-covid-19-pubseq-part5.org
index ec768ed..e260078 100644
--- a/doc/blog/using-covid-19-pubseq-part5.org
+++ b/doc/blog/using-covid-19-pubseq-part5.org
@@ -17,6 +17,7 @@
- [[#adding-fields-to-the-form][Adding fields to the form]]
- [[#testing-the-license-fields][Testing the license fields]]
- [[#changing-geo-or-location-field][Changing GEO or location field]]
+ - [[#relaxing-the-shex-constraint][Relaxing the shex constraint]]
* Modify Metadata
@@ -169,6 +170,8 @@ Unfortunately the main repositories of SARS-CoV-2 have variable
strings of text for location and/or GPS coordinates. For us to support
our schema we had to translate all options and this proves expensive.
+** Relaxing the shex constraint
+
So we decide to relax the enforcement of this type of metadata and to
allow for a free form string.
@@ -188,4 +191,5 @@ format.
So, why does the validation step balk when importing GenBank?
The problem was in the [[https://github.com/arvados/bh20-seq-resource/blob/46d4b7a3a31f6605f81d43ecd6651d60a5782364/bh20sequploader/bh20seq-shex.rdf#L39][shex check]] for RDF generation.
-Removing the wikidata requirement relaxed the imports.
+Removing the wikidata requirement relaxed the imports with this
+[[https://github.com/arvados/bh20-seq-resource/commit/f776816ee2b1af7ccc84afb494f68a81a51f5a76][patch]].