From 246c516e4a8c98394c695dcb446995319d557e01 Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Sat, 22 Aug 2020 14:07:53 +0100
Subject: Generated

---
 doc/blog/using-covid-19-pubseq-part5.org | 6 +++++-
 1 file changed, 5 insertions(+), 1 deletion(-)

(limited to 'doc/blog/using-covid-19-pubseq-part5.org')

diff --git a/doc/blog/using-covid-19-pubseq-part5.org b/doc/blog/using-covid-19-pubseq-part5.org
index ec768ed..e260078 100644
--- a/doc/blog/using-covid-19-pubseq-part5.org
+++ b/doc/blog/using-covid-19-pubseq-part5.org
@@ -17,6 +17,7 @@
    - [[#adding-fields-to-the-form][Adding fields to the form]]
    - [[#testing-the-license-fields][Testing the license fields]]
  - [[#changing-geo-or-location-field][Changing GEO or location field]]
+   - [[#relaxing-the-shex-constraint][Relaxing the shex constraint]]
 
 * Modify Metadata
 
@@ -169,6 +170,8 @@ Unfortunately the main repositories of SARS-CoV-2 have variable
 strings of text for location and/or GPS coordinates. For us to support
 our schema we had to translate all options and this proves expensive.
 
+** Relaxing the shex constraint
+
 So we decide to relax the enforcement of this type of metadata and to
 allow for a free form string.
 
@@ -188,4 +191,5 @@ format.
 
 So, why does the validation step balk when importing GenBank?
 The problem was in the [[https://github.com/arvados/bh20-seq-resource/blob/46d4b7a3a31f6605f81d43ecd6651d60a5782364/bh20sequploader/bh20seq-shex.rdf#L39][shex check]] for RDF generation.
-Removing the wikidata requirement relaxed the imports.
+Removing the wikidata requirement relaxed the imports with this
+[[https://github.com/arvados/bh20-seq-resource/commit/f776816ee2b1af7ccc84afb494f68a81a51f5a76][patch]].
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