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| author | Pjotr Prins | 2020-08-22 14:07:53 +0100 |
|---|---|---|
| committer | Pjotr Prins | 2020-08-22 14:07:53 +0100 |
| commit | 246c516e4a8c98394c695dcb446995319d557e01 (patch) | |
| tree | 08c81638a12fdb94e36285267e77755a2c25cdd7 /doc/blog/using-covid-19-pubseq-part5.org | |
| parent | f776816ee2b1af7ccc84afb494f68a81a51f5a76 (diff) | |
| download | bh20-seq-resource-246c516e4a8c98394c695dcb446995319d557e01.tar.gz bh20-seq-resource-246c516e4a8c98394c695dcb446995319d557e01.tar.lz bh20-seq-resource-246c516e4a8c98394c695dcb446995319d557e01.zip | |
Generated
Diffstat (limited to 'doc/blog/using-covid-19-pubseq-part5.org')
| -rw-r--r-- | doc/blog/using-covid-19-pubseq-part5.org | 6 |
1 files changed, 5 insertions, 1 deletions
diff --git a/doc/blog/using-covid-19-pubseq-part5.org b/doc/blog/using-covid-19-pubseq-part5.org index ec768ed..e260078 100644 --- a/doc/blog/using-covid-19-pubseq-part5.org +++ b/doc/blog/using-covid-19-pubseq-part5.org @@ -17,6 +17,7 @@ - [[#adding-fields-to-the-form][Adding fields to the form]] - [[#testing-the-license-fields][Testing the license fields]] - [[#changing-geo-or-location-field][Changing GEO or location field]] + - [[#relaxing-the-shex-constraint][Relaxing the shex constraint]] * Modify Metadata @@ -169,6 +170,8 @@ Unfortunately the main repositories of SARS-CoV-2 have variable strings of text for location and/or GPS coordinates. For us to support our schema we had to translate all options and this proves expensive. +** Relaxing the shex constraint + So we decide to relax the enforcement of this type of metadata and to allow for a free form string. @@ -188,4 +191,5 @@ format. So, why does the validation step balk when importing GenBank? The problem was in the [[https://github.com/arvados/bh20-seq-resource/blob/46d4b7a3a31f6605f81d43ecd6651d60a5782364/bh20sequploader/bh20seq-shex.rdf#L39][shex check]] for RDF generation. -Removing the wikidata requirement relaxed the imports. +Removing the wikidata requirement relaxed the imports with this +[[https://github.com/arvados/bh20-seq-resource/commit/f776816ee2b1af7ccc84afb494f68a81a51f5a76][patch]]. |