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| author | Pjotr Prins | 2020-08-24 10:35:00 +0100 |
|---|---|---|
| committer | Pjotr Prins | 2020-08-24 17:57:19 +0100 |
| commit | af4800d82b60f945d90b0557e870a64545adfcc9 (patch) | |
| tree | f8443e47e37350d92b140aceda37f68205a90512 /doc/blog/using-covid-19-pubseq-part3.org | |
| parent | 74c0c2dc9e0690a314b6c19b2b80294921979e3d (diff) | |
| download | bh20-seq-resource-af4800d82b60f945d90b0557e870a64545adfcc9.tar.gz bh20-seq-resource-af4800d82b60f945d90b0557e870a64545adfcc9.tar.lz bh20-seq-resource-af4800d82b60f945d90b0557e870a64545adfcc9.zip | |
genbank script documented in blog
Diffstat (limited to 'doc/blog/using-covid-19-pubseq-part3.org')
| -rw-r--r-- | doc/blog/using-covid-19-pubseq-part3.org | 3 |
1 files changed, 2 insertions, 1 deletions
diff --git a/doc/blog/using-covid-19-pubseq-part3.org b/doc/blog/using-covid-19-pubseq-part3.org index fda7be8..9c269b1 100644 --- a/doc/blog/using-covid-19-pubseq-part3.org +++ b/doc/blog/using-covid-19-pubseq-part3.org @@ -238,7 +238,8 @@ and YAML]] extractor specific for GenBank. This means that the steps we took above for uploading a GenBank sequence are already automated. The steps are: from the -~bh20-seq-resource/scripts/download_genbank_data/~ directory +~bh20-seq-resource/scripts/download_genbank_data/~ directory using the +[[https://github.com/arvados/bh20-seq-resource/tree/master/scripts/download_genbank_data][from_genbank_to_fasta_and_yaml.py]] script: #+BEGIN_SRC sh python3 from_genbank_to_fasta_and_yaml.py |