From af4800d82b60f945d90b0557e870a64545adfcc9 Mon Sep 17 00:00:00 2001 From: Pjotr Prins Date: Mon, 24 Aug 2020 10:35:00 +0100 Subject: genbank script documented in blog --- doc/blog/using-covid-19-pubseq-part3.org | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) (limited to 'doc/blog/using-covid-19-pubseq-part3.org') diff --git a/doc/blog/using-covid-19-pubseq-part3.org b/doc/blog/using-covid-19-pubseq-part3.org index fda7be8..9c269b1 100644 --- a/doc/blog/using-covid-19-pubseq-part3.org +++ b/doc/blog/using-covid-19-pubseq-part3.org @@ -238,7 +238,8 @@ and YAML]] extractor specific for GenBank. This means that the steps we took above for uploading a GenBank sequence are already automated. The steps are: from the -~bh20-seq-resource/scripts/download_genbank_data/~ directory +~bh20-seq-resource/scripts/download_genbank_data/~ directory using the +[[https://github.com/arvados/bh20-seq-resource/tree/master/scripts/download_genbank_data][from_genbank_to_fasta_and_yaml.py]] script: #+BEGIN_SRC sh python3 from_genbank_to_fasta_and_yaml.py -- cgit v1.2.3